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BioC 3.4: BUILD report for ToPASeq on morelia

This page was generated on 2016-09-09 03:52:10 -0700 (Fri, 09 Sep 2016).

Package 1200/1251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ToPASeq 1.7.0
Ivana Ihnatova
Snapshot Date: 2016-09-07 19:15:07 -0700 (Wed, 07 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ToPASeq
Last Changed Rev: 117081 / Revision: 120796
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: ToPASeq
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
StartedAt: 2016-09-08 00:36:10 -0700 (Thu, 08 Sep 2016)
EndedAt: 2016-09-08 00:37:03 -0700 (Thu, 08 Sep 2016)
EllapsedTime: 53.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
###
##############################################################################
##############################################################################


* checking for file ‘ToPASeq/DESCRIPTION’ ... OK
* preparing ‘ToPASeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: graphite
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: gRbase
Loading required package: graph
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: Rgraphviz
Loading required package: grid

Error: processing vignette 'ToPASeq.Rnw' failed with diagnostics:
 chunk 3 (label = lib) 
Error in library(DEGraph) : there is no package called ‘DEGraph’
Execution halted