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BioC 3.4: CHECK report for MetaboSignal on moscato1

This page was generated on 2016-09-21 03:48:50 -0700 (Wed, 21 Sep 2016).

Package 720/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MetaboSignal 0.99.13
Andrea Rodriguez-Martinez , Rafael Ayala
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MetaboSignal
Last Changed Rev: 120883 / Revision: 121152
Last Changed Date: 2016-09-12 15:35:14 -0700 (Mon, 12 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MetaboSignal
Version: 0.99.13
Command: rm -rf MetaboSignal.buildbin-libdir MetaboSignal.Rcheck && mkdir MetaboSignal.buildbin-libdir MetaboSignal.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MetaboSignal.buildbin-libdir MetaboSignal_0.99.13.tar.gz >MetaboSignal.Rcheck\00install.out 2>&1 && cp MetaboSignal.Rcheck\00install.out MetaboSignal-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MetaboSignal.buildbin-libdir --install="check:MetaboSignal-install.out" --force-multiarch --no-vignettes --timings MetaboSignal_0.99.13.tar.gz
StartedAt: 2016-09-20 11:47:56 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 11:53:29 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 333.3 seconds
RetCode: 0
Status:  OK  
CheckDir: MetaboSignal.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf MetaboSignal.buildbin-libdir MetaboSignal.Rcheck && mkdir MetaboSignal.buildbin-libdir MetaboSignal.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MetaboSignal.buildbin-libdir MetaboSignal_0.99.13.tar.gz >MetaboSignal.Rcheck\00install.out 2>&1 && cp MetaboSignal.Rcheck\00install.out MetaboSignal-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MetaboSignal.buildbin-libdir --install="check:MetaboSignal-install.out" --force-multiarch --no-vignettes --timings MetaboSignal_0.99.13.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/MetaboSignal.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MetaboSignal/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaboSignal' version '0.99.13'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaboSignal' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MetaboSignal.Rcheck/00install.out:


install for i386

* installing *source* package 'MetaboSignal' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MetaboSignal' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaboSignal' as MetaboSignal_0.99.13.zip
* DONE (MetaboSignal)

MetaboSignal.Rcheck/examples_i386/MetaboSignal-Ex.timings:

nameusersystemelapsed
MS_ChangeNames0.270.031.21
MS_FilterNetwork0.180.000.19
MS_FindKEGG0.240.003.15
MS_FindMappedNodes000
MS_GetKEGG_GeneID0.040.001.11
MS_GetShortestpaths0.070.000.06
MS_NodeBW0.320.000.33
MS_RemoveNode0.020.000.01
MS_ReplaceNode0.020.000.02
MS_ToCytoscape000
MetaboSignal_NetworkCytoscape0.870.552.36
MetaboSignal_distances0.090.010.11
MetaboSignal_matrix000

MetaboSignal.Rcheck/examples_x64/MetaboSignal-Ex.timings:

nameusersystemelapsed
MS_ChangeNames0.120.131.39
MS_FilterNetwork0.150.030.27
MS_FindKEGG0.240.023.26
MS_FindMappedNodes000
MS_GetKEGG_GeneID0.040.000.44
MS_GetShortestpaths0.470.000.46
MS_NodeBW0.050.000.05
MS_RemoveNode0.010.000.02
MS_ReplaceNode0.020.000.01
MS_ToCytoscape000
MetaboSignal_NetworkCytoscape1.030.173.73
MetaboSignal_distances0.110.000.11
MetaboSignal_matrix000