Harman 1.2.0 Jason Ross
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/Harman | Last Changed Rev: 122710 / Revision: 128728 | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | |
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] | |
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### Running command:
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### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Harman.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harman.buildbin-libdir Harman_1.2.0.tar.gz'
>>>>>>>
* installing *source* package ‘Harman’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fPIC -Wall -mtune=core2 -g -O2 -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:
./CSelectRandom.h:392:11: warning: unused variable 'currindex' [-Wunused-variable]
size_t currindex ;
^
./CSelectRandom.h:638:25: warning: unused variable 'ts2' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:638:20: warning: unused variable 'ts1' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:639:11: warning: unused variable 'time1' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:639:18: warning: unused variable 'time2' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:1019:23: warning: unused variable 'randData2' [-Wunused-variable]
size_t randData1, randData2 ;
^
6 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Harman.so Harman.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/Harman.buildbin-libdir/Harman/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Harman)
>>>>>>>
>>>>>>> FIXING LINKS FOR Harman.buildbin-libdir/Harman/libs//Harman.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Harman.buildbin-libdir/Harman/libs//Harman.so"