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BioC 3.4: BUILD BIN report for GenomicTuples on morelia

This page was generated on 2017-04-15 16:25:58 -0400 (Sat, 15 Apr 2017).

Package 513/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicTuples 1.8.3
Peter Hickey
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/GenomicTuples
Last Changed Rev: 127452 / Revision: 128728
Last Changed Date: 2017-03-15 22:03:50 -0400 (Wed, 15 Mar 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: GenomicTuples
Version: 1.8.3
Command: rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicTuples_1.8.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicTuples.buildbin-libdir
StartedAt: 2017-04-15 10:13:20 -0700 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 10:13:38 -0700 (Sat, 15 Apr 2017)
EllapsedTime: 18.4 seconds
RetCode: 0
Status:  OK 
PackageFile: GenomicTuples_1.8.3.tgz
PackageFileSize: 370.8 KiB

Command output

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###
### Running command:
###
###   rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicTuples_1.8.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicTuples.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenomicTuples.buildbin-libdir GenomicTuples_1.8.3.tar.gz'
>>>>>>> 

* installing *source* package ‘GenomicTuples’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c GenomicTuples_init.c -o GenomicTuples_init.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c IPD.cpp -o IPD.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c allTuplesSorted.cpp -o allTuplesSorted.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c pcompareGTuples.cpp -o pcompareGTuples.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicTuples.so GenomicTuples_init.o IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GenomicTuples)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"