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BioC 3.4: BUILD BIN report for CRISPRseek on tokay1

This page was generated on 2017-04-15 16:18:22 -0400 (Sat, 15 Apr 2017).

Package 277/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CRISPRseek 1.14.1
Lihua Julie Zhu
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/CRISPRseek
Last Changed Rev: 127625 / Revision: 128728
Last Changed Date: 2017-03-22 12:01:48 -0400 (Wed, 22 Mar 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CRISPRseek
Version: 1.14.1
Command: cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.14.1.zip . & cd ../..
StartedAt: 2017-04-15 01:58:39 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:59:14 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 35.2 seconds
RetCode: 0
Status:  OK  
PackageFile: CRISPRseek_1.14.1.zip
PackageFileSize: 755.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.14.1.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (284 bytes security) (deflated 56%)
  adding: DESCRIPTION (284 bytes security) (deflated 46%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/CRISPRseek.pdf (284 bytes security) (deflated 15%)
  adding: doc/CRISPRseek.R (284 bytes security) (deflated 83%)
  adding: doc/CRISPRseek.Rnw (284 bytes security) (deflated 70%)
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  adding: extdata/ (324 bytes security) (stored 0%)
  adding: extdata/cpf1.fa (284 bytes security) (deflated 39%)
  adding: extdata/DoenchNBT2014.csv (284 bytes security) (deflated 49%)
  adding: extdata/ForTestinguniqueREs.RData (284 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearch/ (324 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearch/gRNAsCRISPRseek.bed (284 bytes security) (deflated 13%)
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  adding: extdata/gRNAProvidedSearch/REcutDetails.xls (284 bytes security) (deflated 29%)
  adding: extdata/gRNAProvidedSearch/Summary.xls (284 bytes security) (deflated 61%)
  adding: extdata/gRNAProvidedSearchNOoffTarget/ (324 bytes security) (stored 0%)
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  adding: extdata/gRNAProvidedSearchNOoffTarget/Summary.xls (284 bytes security) (deflated 62%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/ (324 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/gRNAsCRISPRseek.bed (284 bytes security) (deflated 11%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/OfftargetAnalysis.xls (284 bytes security) (deflated 52%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/REcutDetails.xls (284 bytes security) (deflated 24%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/Summary.xls (284 bytes security) (deflated 62%)
  adding: extdata/hits.txt (284 bytes security) (deflated 73%)
  adding: extdata/inputseq.fa (284 bytes security) (deflated 13%)
  adding: extdata/NatureBiot2016SuppTable19DoenchRoot.csv (284 bytes security) (deflated 57%)
  adding: extdata/NEBenzymes.fa (284 bytes security) (deflated 55%)
  adding: extdata/pairedSearch/ (324 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withoutRE/ (324 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withoutRE/OfftargetAnalysis.xls (284 bytes security) (deflated 69%)
  adding: extdata/pairedSearch/withoutRE/pairedgRNAs.xls (284 bytes security) (deflated 36%)
  adding: extdata/pairedSearch/withoutRE/REcutDetails.xls (284 bytes security) (deflated 84%)
  adding: extdata/pairedSearch/withoutRE/Summary.xls (284 bytes security) (deflated 61%)
  adding: extdata/pairedSearch/withRE/ (324 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withRE/OfftargetAnalysis.xls (284 bytes security) (deflated 69%)
  adding: extdata/pairedSearch/withRE/pairedgRNAs.xls (284 bytes security) (deflated 36%)
  adding: extdata/pairedSearch/withRE/REcutDetails.xls (284 bytes security) (deflated 84%)
  adding: extdata/pairedSearch/withRE/Summary.xls (284 bytes security) (deflated 61%)
  adding: extdata/recreateTestResults.R (284 bytes security) (deflated 80%)
  adding: extdata/RIPK1stop.fa (284 bytes security) (deflated 44%)
  adding: extdata/rs362331C.fa (284 bytes security) (deflated 19%)
  adding: extdata/rs362331T.fa (284 bytes security) (deflated 15%)
  adding: extdata/seqs2.5prime.RData (284 bytes security) (stored 0%)
  adding: extdata/seqs2.RData (284 bytes security) (stored 0%)
  adding: extdata/seqs2CFD.RData (284 bytes security) (stored 0%)
  adding: extdata/T2.fa (284 bytes security) (deflated 25%)
  adding: extdata/T2plus100OffTargets.bed (284 bytes security) (deflated 70%)
  adding: extdata/test.bed (284 bytes security) (deflated 21%)
  adding: extdata/testHsap_GATA1_ex2_gRNA1.fa (284 bytes security) (deflated 2%)
  adding: extdata/testMouse/ (324 bytes security) (stored 0%)
  adding: extdata/testMouse/NOorgAnn/ (324 bytes security) (stored 0%)
  adding: extdata/testMouse/NOorgAnn/mRIPK1stop.gbk (284 bytes security) (deflated 76%)
  adding: extdata/testMouse/NOorgAnn/OfftargetAnalysis.xls (284 bytes security) (deflated 86%)
  adding: extdata/testMouse/NOorgAnn/pairedgRNAs.xls (284 bytes security) (deflated 82%)
  adding: extdata/testMouse/NOorgAnn/REcutDetails.xls (284 bytes security) (deflated 80%)
  adding: extdata/testMouse/NOorgAnn/RIPK1stopallgRNAs.fa (284 bytes security) (deflated 73%)
  adding: extdata/testMouse/NOorgAnn/Summary.xls (284 bytes security) (deflated 75%)
  adding: extdata/testMouse/NOTannotateExon/ (324 bytes security) (stored 0%)
  adding: extdata/testMouse/NOTannotateExon/mRIPK1stop.gbk (284 bytes security) (deflated 76%)
  adding: extdata/testMouse/NOTannotateExon/OfftargetAnalysis.xls (284 bytes security) (deflated 85%)
  adding: extdata/testMouse/NOTannotateExon/pairedgRNAs.xls (284 bytes security) (deflated 82%)
  adding: extdata/testMouse/NOTannotateExon/REcutDetails.xls (284 bytes security) (deflated 80%)
  adding: extdata/testMouse/NOTannotateExon/RIPK1stopallgRNAs.fa (284 bytes security) (deflated 73%)
  adding: extdata/testMouse/NOTannotateExon/Summary.xls (284 bytes security) (deflated 75%)
  adding: extdata/testMouse/WithorgAnn/ (324 bytes security) (stored 0%)
  adding: extdata/testMouse/WithorgAnn/mRIPK1stop.gbk (284 bytes security) (deflated 76%)
  adding: extdata/testMouse/WithorgAnn/OfftargetAnalysis.xls (284 bytes security) (deflated 86%)
  adding: extdata/testMouse/WithorgAnn/pairedgRNAs.xls (284 bytes security) (deflated 82%)
  adding: extdata/testMouse/WithorgAnn/REcutDetails.xls (284 bytes security) (deflated 80%)
  adding: extdata/testMouse/WithorgAnn/RIPK1stopallgRNAs.fa (284 bytes security) (deflated 73%)
  adding: extdata/testMouse/WithorgAnn/Summary.xls (284 bytes security) (deflated 75%)
  adding: extdata/testspeed.fa (284 bytes security) (deflated 97%)
  adding: extdata/tobi2.fa (284 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/ (324 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withoutRE/ (324 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withoutRE/OfftargetAnalysis.xls (284 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withoutRE/pairedgRNAs.xls (284 bytes security) (deflated 36%)
  adding: extdata/unPairedSearch/withoutRE/REcutDetails.xls (284 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withoutRE/Summary.xls (284 bytes security) (deflated 66%)
  adding: extdata/unPairedSearch/withRE/ (324 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withRE/OfftargetAnalysis.xls (284 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withRE/pairedgRNAs.xls (284 bytes security) (deflated 36%)
  adding: extdata/unPairedSearch/withRE/REcutDetails.xls (284 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withRE/Summary.xls (284 bytes security) (deflated 64%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 60%)
  adding: help/CRISPRseek.rdb (284 bytes security) (deflated 1%)
  adding: help/CRISPRseek.rdx (284 bytes security) (stored 0%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
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  adding: html/R.css (284 bytes security) (deflated 75%)
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  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
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  adding: NAMESPACE (284 bytes security) (deflated 48%)
  adding: NEWS (284 bytes security) (deflated 69%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/CRISPRseek (284 bytes security) (deflated 41%)
  adding: R/CRISPRseek.rdb (284 bytes security) (deflated 1%)
  adding: R/CRISPRseek.rdx (284 bytes security) (stored 0%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/test_compare2Sequences.R (284 bytes security) (deflated 80%)
  adding: unitTests/test_getOfftargetScore2.R (284 bytes security) (deflated 70%)
  adding: unitTests/test_gRNAprovidedCompare2Seqs.R (284 bytes security) (deflated 72%)
  adding: unitTests/test_gRNAprovidedNoPAM.R (284 bytes security) (deflated 77%)
  adding: unitTests/test_mouse_orgAnn_annotateExon.R (284 bytes security) (deflated 82%)
  adding: unitTests/test_offTargetAnalysis.R (284 bytes security) (deflated 89%)