BSgenome 1.42.0
H. Pagès
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/BSgenome | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd BSgenome.buildbin-libdir/BSgenome && zip -r ../../BSgenome_1.42.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: DESCRIPTION (284 bytes security) (deflated 54%)
adding: doc/ (324 bytes security) (stored 0%)
adding: doc/BSgenomeForge.pdf (284 bytes security) (deflated 11%)
adding: doc/BSgenomeForge.R (284 bytes security) (deflated 76%)
adding: doc/BSgenomeForge.Rnw (284 bytes security) (deflated 73%)
adding: doc/GenomeSearching.pdf (284 bytes security) (deflated 9%)
adding: doc/GenomeSearching.R (284 bytes security) (deflated 80%)
adding: doc/GenomeSearching.Rnw (284 bytes security) (deflated 68%)
adding: doc/index.html (284 bytes security) (deflated 67%)
adding: extdata/ (324 bytes security) (stored 0%)
adding: extdata/ce2chrM.fa.gz (284 bytes security) (stored 0%)
adding: extdata/ce2chrX.fa.gz (284 bytes security) (deflated 0%)
adding: extdata/ce2dict0.fa (284 bytes security) (deflated 65%)
adding: extdata/GentlemanLab/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/1000genomes/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh (284 bytes security) (deflated 59%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed (284 bytes security) (deflated 48%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh (284 bytes security) (deflated 61%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed (284 bytes security) (deflated 48%)
adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed (284 bytes security) (deflated 50%)
adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT (284 bytes security) (deflated 61%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed (284 bytes security) (deflated 56%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed (284 bytes security) (deflated 56%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed (284 bytes security) (deflated 47%)
adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/sort_danRer10.2bit.R (284 bytes security) (deflated 47%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT (284 bytes security) (deflated 23%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh (284 bytes security) (deflated 59%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT (284 bytes security) (deflated 24%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R (284 bytes security) (deflated 58%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT (284 bytes security) (deflated 24%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R (284 bytes security) (deflated 58%)
adding: extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed (284 bytes security) (deflated 77%)
adding: extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed (284 bytes security) (deflated 56%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed (284 bytes security) (deflated 82%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R (284 bytes security) (deflated 47%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed (284 bytes security) (deflated 51%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed (284 bytes security) (deflated 60%)
adding: extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed (284 bytes security) (deflated 48%)
adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed (284 bytes security) (deflated 58%)
adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed (284 bytes security) (deflated 59%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed (284 bytes security) (deflated 56%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed (284 bytes security) (deflated 48%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed (284 bytes security) (deflated 66%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed (284 bytes security) (deflated 51%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed (284 bytes security) (deflated 52%)
adding: extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R (284 bytes security) (deflated 61%)
adding: extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed (284 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R (284 bytes security) (deflated 58%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed (284 bytes security) (deflated 54%)
adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed (284 bytes security) (deflated 51%)
adding: extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed (284 bytes security) (deflated 51%)
adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed (284 bytes security) (deflated 46%)
adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R (284 bytes security) (deflated 55%)
adding: extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed (284 bytes security) (deflated 56%)
adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed (284 bytes security) (deflated 49%)
adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/ (324 bytes security) (stored 0%)
adding: extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R (284 bytes security) (deflated 53%)
adding: extdata/GentlemanLab/bump_seed_version.sh (284 bytes security) (deflated 33%)
adding: extdata/GentlemanLab/ForgeAll.R (284 bytes security) (deflated 79%)
adding: help/ (324 bytes security) (stored 0%)
adding: help/aliases.rds (284 bytes security) (stored 0%)
adding: help/AnIndex (284 bytes security) (deflated 84%)
adding: help/BSgenome.rdb (284 bytes security) (deflated 1%)
adding: help/BSgenome.rdx (284 bytes security) (stored 0%)
adding: help/paths.rds (284 bytes security) (stored 0%)
adding: html/ (324 bytes security) (stored 0%)
adding: html/00Index.html (284 bytes security) (deflated 89%)
adding: html/R.css (284 bytes security) (deflated 75%)
adding: INDEX (284 bytes security) (deflated 62%)
adding: MD5 (284 bytes security) (deflated 66%)
adding: Meta/ (324 bytes security) (stored 0%)
adding: Meta/hsearch.rds (284 bytes security) (stored 0%)
adding: Meta/links.rds (284 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
adding: Meta/package.rds (284 bytes security) (stored 0%)
adding: Meta/Rd.rds (284 bytes security) (stored 0%)
adding: Meta/vignette.rds (284 bytes security) (stored 0%)
adding: NAMESPACE (284 bytes security) (deflated 71%)
adding: NEWS (284 bytes security) (deflated 38%)
adding: pkgtemplates/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/DESCRIPTION (284 bytes security) (deflated 38%)
adding: pkgtemplates/BSgenome_datapkg/inst/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/inst/extdata/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/man/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/man/package.Rd (284 bytes security) (deflated 62%)
adding: pkgtemplates/BSgenome_datapkg/NAMESPACE (284 bytes security) (deflated 34%)
adding: pkgtemplates/BSgenome_datapkg/R/ (324 bytes security) (stored 0%)
adding: pkgtemplates/BSgenome_datapkg/R/zzz.R (284 bytes security) (deflated 56%)
adding: pkgtemplates/MaskedBSgenome_datapkg/ (324 bytes security) (stored 0%)
adding: pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION (284 bytes security) (deflated 39%)
adding: pkgtemplates/MaskedBSgenome_datapkg/inst/ (324 bytes security) (stored 0%)
adding: pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/ (324 bytes security) (stored 0%)
adding: pkgtemplates/MaskedBSgenome_datapkg/man/ (324 bytes security) (stored 0%)
adding: pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd (284 bytes security) (deflated 59%)
adding: pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE (284 bytes security) (deflated 32%)
adding: pkgtemplates/MaskedBSgenome_datapkg/R/ (324 bytes security) (stored 0%)
adding: pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R (284 bytes security) (deflated 51%)
adding: R/ (324 bytes security) (stored 0%)
adding: R/BSgenome (284 bytes security) (deflated 41%)
adding: R/BSgenome.rdb (284 bytes security) (deflated 27%)
adding: R/BSgenome.rdx (284 bytes security) (deflated 3%)