PWMEnrich.Hsapiens.background 4.6.0
Robert Stojnic
| Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/PWMEnrich.Hsapiens.background | | Last Changed Rev: 3760 / Revision: 3935 | | Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf PWMEnrich.Hsapiens.background.buildbin-libdir PWMEnrich.Hsapiens.background.Rcheck && mkdir PWMEnrich.Hsapiens.background.buildbin-libdir PWMEnrich.Hsapiens.background.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PWMEnrich.Hsapiens.background.buildbin-libdir PWMEnrich.Hsapiens.background_4.6.0.tar.gz >PWMEnrich.Hsapiens.background.Rcheck\00install.out 2>&1 && cp PWMEnrich.Hsapiens.background.Rcheck\00install.out PWMEnrich.Hsapiens.background-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=PWMEnrich.Hsapiens.background.buildbin-libdir --install="check:PWMEnrich.Hsapiens.background-install.out" --force-multiarch --no-vignettes --timings PWMEnrich.Hsapiens.background_4.6.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PWMEnrich.Hsapiens.background/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PWMEnrich.Hsapiens.background' version '4.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PWMEnrich.Hsapiens.background' can be installed ... OK
* checking installed package size ... NOTE
installed size is 15.8Mb
sub-directories of 1Mb or more:
data 15.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
MotifDb.Hsap.PFM.RData 148Kb 102Kb xz
MotifDb.Hsap.RData 580Kb 451Kb xz
PWMCutoff4.hg19.MotifDb.Hsap.RData 524Kb 407Kb xz
PWMCutoff5.hg19.MotifDb.Hsap.RData 524Kb 407Kb xz
PWMLogn.hg19.MotifDb.Hsap.RData 820Kb 648Kb xz
PWMPvalueCutoff1e2.hg19.MotifDb.Hsap.RData 540Kb 415Kb xz
PWMPvalueCutoff1e3.hg19.MotifDb.Hsap.RData 540Kb 415Kb xz
PWMPvalueCutoff1e4.hg19.MotifDb.Hsap.RData 540Kb 414Kb xz
hg19.upstream2000.RData 11.6Mb 9.1Mb xz
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
PWMEnrich.Hsapiens.background-package 3.58 0 8.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
PWMEnrich.Hsapiens.background-package 4.46 0.03 9.97
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'E:/biocbld/bbs-3.3-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'PWMEnrich.Hsapiens.background' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'PWMEnrich.Hsapiens.background' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PWMEnrich.Hsapiens.background' as PWMEnrich.Hsapiens.background_4.6.0.zip
* DONE (PWMEnrich.Hsapiens.background)
PWMEnrich.Hsapiens.background.Rcheck/examples_i386/PWMEnrich.Hsapiens.background-Ex.timings:
PWMEnrich.Hsapiens.background.Rcheck/examples_x64/PWMEnrich.Hsapiens.background-Ex.timings: