widgetTools 1.50.0
Jianhua Zhang
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/widgetTools | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings widgetTools_1.50.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/widgetTools.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘widgetTools/DESCRIPTION’ ... OK
* this is package ‘widgetTools’ version ‘1.50.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘widgetTools’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘methods’ which was already attached by Depends.
Please remove these calls from your code.
'library' or 'require' call to ‘Biobase’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘tcltk’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘widgetTools/R/zzz.R’:
.onLoad has wrong argument list ‘libname, pkgname, where’
.onLoad calls:
require("methods", quietly = TRUE)
.onAttach calls:
require("Biobase")
Package startup functions should have two arguments with names starting
with ‘lib’ and ‘pkg’, respectively.
Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.
.getChanges: warning in get(wName(pWidgets[[i]]), env =
wEnv(pWidgets[[i]])): partial argument match of 'env' to 'envir'
.putPW2Env : putOne: warning in assign(wName(pWidget), pWidget, env =
wEnv(pWidget)): partial argument match of 'env' to 'envir'
updateCheck,widget: warning in get(PWName, env = wEnv(object)): partial
argument match of 'env' to 'envir'
updateCheck,widget: warning in assign(wName(tempPW), tempPW, env =
wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateList,widget: warning in get(PWName, env = wEnv(object)): partial
argument match of 'env' to 'envir'
updateList,widget: warning in assign(wName(tempPW), tempPW, env =
wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateRadio,widget: warning in get(PWName, env = wEnv(object)): partial
argument match of 'env' to 'envir'
updateRadio,widget: warning in assign(wName(tempPW), tempPW, env =
wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateText,widget: warning in get(PWName, env = wEnv(object)): partial
argument match of 'env' to 'envir'
updateText,widget: warning in assign(wName(tempPW), tempPW, env =
wEnv(tempPW)): partial argument match of 'env' to 'envir'
.doList: no visible global function definition for ‘tklistbox’
.doText: no visible global function definition for ‘tktext’
.doText: no visible global function definition for ‘tkinsert’
.doWidgets : doOne: no visible global function definition for ‘tkframe’
.doWidgets : doOne: no visible global function definition for ‘tclVar’
.doWidgets : doOne: no visible global function definition for
‘tkconfigure’
.doWidgets : doOne: no visible global function definition for ‘tkpack’
.doWidgets : doOne : <anonymous>: no visible global function definition
for ‘tkfocus’
.doWidgets : doOne: no visible global function definition for ‘tkbind’
.doWidgets : doRow: no visible global function definition for ‘tkframe’
.doWidgets : doRow: no visible global function definition for ‘tkpack’
.getViewer: no visible global function definition for ‘tkcanvas’
.getViewer: no visible global function definition for ‘tkconfigure’
.onAttach: no visible global function definition for ‘addVigs2WinMenu’
.renderButton: no visible global function definition for ‘tkbutton’
.renderButton : <anonymous>: no visible global function definition for
‘tkfocus’
.renderButton: no visible global function definition for ‘tkconfigure’
.renderCheck: no visible global function definition for ‘tkcheckbutton’
.renderCheck: no visible global function definition for ‘tkselect’
.renderEntry: no visible global function definition for ‘tkentry’
.renderLabel: no visible global function definition for ‘tklabel’
.renderRadio: no visible global function definition for ‘tkradiobutton’
.renderViewer: no visible global function definition for ‘tkframe’
.renderViewer: no visible global function definition for ‘tkconfigure’
.renderViewer: no visible global function definition for ‘tkpack’
.renew : renewOne: no visible global function definition for ‘tkselect’
.renew : renewOne: no visible global function definition for
‘tkdeselect’
dropdownList : upDateEntry: no visible global function definition for
‘tkconfigure’
dropdownList: no visible global function definition for ‘tkmessageBox’
dropdownList: no visible global function definition for ‘tclvalue<-’
dropdownList: no visible global function definition for ‘tkframe’
dropdownList: no visible global function definition for ‘tkentry’
dropdownList: no visible global function definition for ‘tkconfigure’
dropdownList: no visible global function definition for ‘tkpack’
dropdownList: no visible global function definition for ‘tkbutton’
getEntryValue: no visible global function definition for ‘tclvalue’
getEntryValue: no visible global function definition for ‘tkget’
getListOption : end: no visible global function definition for ‘tclObj’
getListOption : end: no visible global function definition for
‘tkcurselection’
getListOption : end: no visible global function definition for
‘tkgrab.release’
getListOption : end: no visible global function definition for
‘tkdestroy’
getListOption: no visible global function definition for ‘tclVar’
getListOption: no visible global function definition for ‘tclObj<-’
getListOption: no visible global function definition for ‘tkwinfo’
getListOption: no visible global function definition for
‘tkwm.overrideredirect’
getListOption: no visible global function definition for ‘tktoplevel’
getListOption: no visible global function definition for ‘tkdestroy’
getListOption: no visible global function definition for
‘tkwm.geometry’
getListOption: no visible global function definition for ‘tklistbox’
getListOption: no visible global function definition for ‘tkscrollbar’
getListOption : <anonymous>: no visible global function definition for
‘tkyview’
getListOption: no visible global function definition for ‘tkconfigure’
getListOption : <anonymous>: no visible global function definition for
‘tkset’
getListOption: no visible global function definition for ‘tkpack’
getListOption: no visible global function definition for ‘tkbind’
getListOption: no visible global function definition for ‘tkgrab.set’
getListOption: no visible global function definition for
‘tkwait.window’
getListValue: no visible global function definition for
‘tkcurselection’
getListValue: no visible global function definition for ‘tkget’
getTextValue: no visible global function definition for ‘tclvalue’
getTextValue: no visible global function definition for ‘tkget’
makeViewer: no visible global function definition for ‘tkscrollbar’
makeViewer : <anonymous>: no visible global function definition for
‘tkyview’
makeViewer: no visible global function definition for ‘tkconfigure’
makeViewer : <anonymous>: no visible global function definition for
‘tkset’
makeViewer: no visible global function definition for ‘tkpack’
makeViewer : <anonymous>: no visible global function definition for
‘tkxview’
oneVScrList: no visible global function definition for ‘tkframe’
oneVScrList: no visible global function definition for ‘tkpack’
oneVScrList: no visible global function definition for ‘tkbutton’
oneVScrList: no visible global function definition for ‘tklistbox’
oneVScrList : bindYView: no visible global function definition for
‘tkyview’
oneVScrList: no visible global function definition for ‘tkscrollbar’
oneVScrList: no visible global function definition for ‘tkconfigure’
oneVScrList : <anonymous>: no visible global function definition for
‘tkset’
tooltip : end: no visible global function definition for ‘tkdestroy’
tooltip: no visible global function definition for ‘tkwinfo’
tooltip: no visible global function definition for
‘tkwm.overrideredirect’
tooltip: no visible global function definition for ‘tktoplevel’
tooltip: no visible global function definition for ‘tkdestroy’
tooltip: no visible global function definition for ‘tkwm.geometry’
tooltip: no visible global function definition for ‘tklabel’
tooltip: no visible global function definition for ‘tkpack’
tooltip: no visible global function definition for ‘tkbind’
tooltip: no visible global function definition for ‘tkwait.window’
widget: no visible global function definition for ‘tkgrab.set’
widget : cancelBut: no visible global function definition for
‘tkgrab.release’
widget: no visible global function definition for ‘tcl’
widgetView: no visible global function definition for ‘tktoplevel’
widgetView: no visible global function definition for ‘tktitle<-’
writeList: no visible global function definition for ‘capture.output’
writeList: no visible global function definition for ‘tkdelete’
writeList: no visible binding for global variable ‘tkinsert’
writeText: no visible global function definition for ‘capture.output’
writeText: no visible global function definition for ‘tkdelete’
writeText: no visible global function definition for ‘tkinsert’
killWin,widgetView: no visible global function definition for
‘tkdestroy’
updateList,widget: no visible binding for global variable ‘bName’
winWait,widgetView: no visible global function definition for
‘tkwait.window’
Undefined global functions or variables:
addVigs2WinMenu bName capture.output tcl tclObj tclObj<- tclVar
tclvalue tclvalue<- tkbind tkbutton tkcanvas tkcheckbutton
tkconfigure tkcurselection tkdelete tkdeselect tkdestroy tkentry
tkfocus tkframe tkget tkgrab.release tkgrab.set tkinsert tklabel
tklistbox tkmessageBox tkpack tkradiobutton tkscrollbar tkselect
tkset tktext tktitle<- tktoplevel tkwait.window tkwinfo tkwm.geometry
tkwm.overrideredirect tkxview tkyview
Consider adding
importFrom("utils", "capture.output")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.3-bioc/meat/widgetTools.Rcheck/00check.log’
for details.