systemPipeR 1.6.4
Thomas Girke
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/systemPipeR | | Last Changed Rev: 119926 / Revision: 122332 | | Last Changed Date: 2016-08-06 14:17:03 -0700 (Sat, 06 Aug 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.6.4.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: DESCRIPTION (188 bytes security) (deflated 46%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/index.html (188 bytes security) (deflated 80%)
adding: doc/systemPipeChIPseq.pdf (188 bytes security) (deflated 11%)
adding: doc/systemPipeChIPseq.R (188 bytes security) (deflated 73%)
adding: doc/systemPipeChIPseq.Rnw (188 bytes security) (deflated 65%)
adding: doc/systemPipeR.html (188 bytes security) (deflated 35%)
adding: doc/systemPipeR.R (188 bytes security) (deflated 77%)
adding: doc/systemPipeR.Rmd (188 bytes security) (deflated 71%)
adding: doc/systemPipeRIBOseq.pdf (188 bytes security) (deflated 16%)
adding: doc/systemPipeRIBOseq.R (188 bytes security) (deflated 76%)
adding: doc/systemPipeRIBOseq.Rnw (188 bytes security) (deflated 67%)
adding: doc/systemPipeRNAseq.pdf (188 bytes security) (deflated 14%)
adding: doc/systemPipeRNAseq.R (188 bytes security) (deflated 70%)
adding: doc/systemPipeRNAseq.Rnw (188 bytes security) (deflated 63%)
adding: doc/systemPipeVARseq.pdf (188 bytes security) (deflated 12%)
adding: doc/systemPipeVARseq.R (188 bytes security) (deflated 81%)
adding: doc/systemPipeVARseq.Rnw (188 bytes security) (deflated 70%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/.BatchJobs.R (188 bytes security) (deflated 19%)
adding: extdata/alignStats.xls (188 bytes security) (deflated 62%)
adding: extdata/annotate_peaks.param (188 bytes security) (deflated 44%)
adding: extdata/annotate_vars.param (188 bytes security) (deflated 43%)
adding: extdata/bowtiePE.param (188 bytes security) (deflated 42%)
adding: extdata/bowtieSE.param (188 bytes security) (deflated 41%)
adding: extdata/bwa.param (188 bytes security) (deflated 43%)
adding: extdata/countDFeByg.xls (188 bytes security) (deflated 61%)
adding: extdata/count_rangesets.param (188 bytes security) (deflated 44%)
adding: extdata/custom_Fct.R (188 bytes security) (deflated 58%)
adding: extdata/filter_gatk.param (188 bytes security) (deflated 43%)
adding: extdata/filter_sambcf.param (188 bytes security) (deflated 43%)
adding: extdata/filter_vartools.param (188 bytes security) (deflated 43%)
adding: extdata/gatk.param (188 bytes security) (deflated 50%)
adding: extdata/gatk_run.sh (188 bytes security) (deflated 61%)
adding: extdata/gsnap.param (188 bytes security) (deflated 43%)
adding: extdata/macs2.param (188 bytes security) (deflated 45%)
adding: extdata/macs2_noinput.param (188 bytes security) (deflated 45%)
adding: extdata/Makefile (188 bytes security) (deflated 62%)
adding: extdata/rpkmDFeByg.xls (188 bytes security) (deflated 49%)
adding: extdata/rsubread.param (188 bytes security) (deflated 43%)
adding: extdata/rundiff.param (188 bytes security) (deflated 43%)
adding: extdata/sambcf.param (188 bytes security) (deflated 49%)
adding: extdata/sambcf_run.sh (188 bytes security) (deflated 54%)
adding: extdata/slides/ (256 bytes security) (stored 0%)
adding: extdata/slides/bibtex.bib (188 bytes security) (deflated 69%)
adding: extdata/slides/images/ (256 bytes security) (stored 0%)
adding: extdata/slides/images/SystemPipeR_Workflow.png (188 bytes security) (deflated 1%)
adding: extdata/slides/logo.png (188 bytes security) (deflated 1%)
adding: extdata/slides/systemPipeRslides.html (188 bytes security) (deflated 43%)
adding: extdata/slides/systemPipeRslides.R (188 bytes security) (deflated 70%)
adding: extdata/slides/systemPipeRslides.Rmd (188 bytes security) (deflated 64%)
adding: extdata/slides/systemPipeRslides_cache/ (256 bytes security) (stored 0%)
adding: extdata/slides/systemPipeRslides_cache/html/ (256 bytes security) (stored 0%)
adding: extdata/targets.txt (188 bytes security) (deflated 65%)
adding: extdata/targetsPE.txt (188 bytes security) (deflated 70%)
adding: extdata/targetsPE_chip.txt (188 bytes security) (deflated 69%)
adding: extdata/targets_chip.txt (188 bytes security) (deflated 64%)
adding: extdata/tophat.param (188 bytes security) (deflated 42%)
adding: extdata/torque.tmpl (188 bytes security) (deflated 49%)
adding: extdata/trim.param (188 bytes security) (deflated 43%)
adding: extdata/trimPE.param (188 bytes security) (deflated 49%)
adding: extdata/vartools.param (188 bytes security) (deflated 43%)
adding: extdata/vignette_archive/ (256 bytes security) (stored 0%)
adding: extdata/vignette_archive/systemPipeR.pdf (188 bytes security) (deflated 8%)
adding: extdata/vignette_archive/systemPipeR.R (188 bytes security) (deflated 74%)
adding: extdata/vignette_archive/systemPipeR.Rnw (188 bytes security) (deflated 68%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 78%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: help/systemPipeR.rdb (188 bytes security) (deflated 0%)
adding: help/systemPipeR.rdx (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 87%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 60%)
adding: MD5 (188 bytes security) (deflated 52%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 50%)
adding: NEWS (188 bytes security) (deflated 54%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/systemPipeR (188 bytes security) (deflated 41%)
adding: R/systemPipeR.rdb (188 bytes security) (deflated 19%)
adding: R/systemPipeR.rdx (188 bytes security) (deflated 2%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/SRR446027_1.fastq (188 bytes security) (stored 0%)
adding: unitTests/SRR446028_1.fastq (188 bytes security) (stored 0%)
adding: unitTests/SRR446029_1.fastq (188 bytes security) (stored 0%)
adding: unitTests/SRR446030_1.fastq (188 bytes security) (stored 0%)
adding: unitTests/targets.txt (188 bytes security) (deflated 39%)
adding: unitTests/test_classes.R (188 bytes security) (deflated 32%)
adding: unitTests/tophat.param (188 bytes security) (deflated 42%)