##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf rsbml.buildbin-libdir && mkdir rsbml.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/rsbml_2.30.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=rsbml.buildbin-libdir --merge-multiarch rsbml_2.30.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL rsbml_2.30.0.zip && rm rsbml_2.30.0.tar.gz rsbml_2.30.0.zip
###
##############################################################################
##############################################################################
install for i386
* installing *source* package 'rsbml' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c StringMap.c -o StringMap.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/common.h:32,
from StringMap.c:52:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/common/common.h:106:0,
from StringMap.c:52:
C:/libsbml/i386/include/sbml/util/util.h:258:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
int finite (double d);
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c check.c -o check.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from check.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from check.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c doc.c -o doc.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from doc.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from doc.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
doc.c: In function 'rsbml_build_doc_simple_species_reference':
doc.c:453:8: warning: unused variable 'tmp' [-Wunused-variable]
SEXP tmp = GET_SLOT(r_simple_species_reference, install("species"));
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c dom.c -o dom.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from dom.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from dom.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from graph.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from graph.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from init.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from init.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from io.c:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from io.c:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_32/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -mtune=core2 -c layoutWrappers.cpp -o layoutWrappers.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLInputStream.h:47:0,
from C:/libsbml/i386/include/sbml/SpeciesReference.h:268,
from C:/libsbml/i386/include/sbml/SBMLTransforms.h:48,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:260,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/i386/include/sbml/xml/XMLTokenizer.h:48:21: warning: type attributes ignored after type is already defined [-Wattributes]
class LIBLAX_EXTERN XMLToken;
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mathml.c -o mathml.o
In file included from C:/libsbml/i386/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/i386/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/i386/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from mathml.c:3:
C:/libsbml/i386/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/i386/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/i386/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/i386/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/i386/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/i386/include/sbml/SBMLError.h:426,
from C:/libsbml/i386/include/sbml/SBMLDocument.h:257,
from C:/libsbml/i386/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from mathml.c:3:
C:/libsbml/i386/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
mathml.c: In function 'rmathml_SEXP':
mathml.c:56:12: warning: unused variable 'closure' [-Wunused-variable]
SEXP closure, pargs;
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c simulate.c -o simulate.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/i386/bin -lsbml -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
mkdir -p E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/i386
cp C:/libsbml/i386/bin/*.dll E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs//i386
installing to E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'rsbml' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c StringMap.c -o StringMap.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/common.h:32,
from StringMap.c:52:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/common/common.h:106:0,
from StringMap.c:52:
C:/libsbml/x64/include/sbml/util/util.h:258:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
int finite (double d);
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c check.c -o check.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from check.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from check.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c doc.c -o doc.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from doc.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from doc.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
doc.c: In function 'rsbml_build_doc_simple_species_reference':
doc.c:453:8: warning: unused variable 'tmp' [-Wunused-variable]
SEXP tmp = GET_SLOT(r_simple_species_reference, install("species"));
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c dom.c -o dom.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from dom.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from dom.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from graph.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from graph.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
graph.c: In function 'rsbml_build_graph':
graph.c:57:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
StringMap_put(id_map, CHAR(STRING_ELT(r_nodes, i)), (void *)i);
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from init.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from init.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from io.c:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from io.c:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/Rtools/mingw_64/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -mtune=core2 -c layoutWrappers.cpp -o layoutWrappers.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLInputStream.h:47:0,
from C:/libsbml/x64/include/sbml/SpeciesReference.h:268,
from C:/libsbml/x64/include/sbml/SBMLTransforms.h:48,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:260,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from layoutWrappers.cpp:1:
C:/libsbml/x64/include/sbml/xml/XMLTokenizer.h:48:21: warning: type attributes ignored after type is already defined [-Wattributes]
class LIBLAX_EXTERN XMLToken;
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c mathml.c -o mathml.o
In file included from C:/libsbml/x64/include/sbml/common/libsbml-version.h:32:0,
from C:/libsbml/x64/include/sbml/common/libsbml-config.h:63,
from C:/libsbml/x64/include/sbml/common/sbmlfwd.h:40,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:32,
from rsbml.h:1,
from mathml.c:3:
C:/libsbml/x64/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4800)
^
C:/libsbml/x64/include/sbml/common/extern.h:66:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4291)
^
C:/libsbml/x64/include/sbml/common/extern.h:75:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
C:/libsbml/x64/include/sbml/common/extern.h:76:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4275)
^
In file included from C:/libsbml/x64/include/sbml/xml/XMLError.h:329:0,
from C:/libsbml/x64/include/sbml/SBMLError.h:426,
from C:/libsbml/x64/include/sbml/SBMLDocument.h:257,
from C:/libsbml/x64/include/sbml/SBMLTypes.h:34,
from rsbml.h:1,
from mathml.c:3:
C:/libsbml/x64/include/sbml/xml/XMLExtern.h:70:0: warning: ignoring #pragma warning [-Wunknown-pragmas]
#pragma warning(disable: 4251)
^
mathml.c: In function 'rmathml_SEXP':
mathml.c:56:12: warning: unused variable 'closure' [-Wunused-variable]
SEXP closure, pargs;
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IE:/biocbld/BBS-3˜1.3-B/R/include -DLIBSBML3 -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c simulate.c -o simulate.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/x64/bin -lsbml -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
mkdir -p E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
cp C:/libsbml/x64/bin/*.dll E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs//x64
installing to E:/biocbld/bbs-3.3-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rsbml' as rsbml_2.30.0.zip
* DONE (rsbml)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'rsbml' successfully unpacked and MD5 sums checked
