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BioC 3.3: INSTALL report for openCyto on linux2.bioconductor.org

This page was generated on 2015-10-27 12:12:28 -0400 (Tue, 27 Oct 2015).

Package 731/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 1.9.2
Mike Jiang
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/openCyto
Last Changed Rev: 109945 / Revision: 109948
Last Changed Date: 2015-10-26 18:00:01 -0400 (Mon, 26 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK YES, new version is higher than in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: openCyto
Version: 1.9.2
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL openCyto
StartedAt: 2015-10-26 21:16:00 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:16:18 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 18.1 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL openCyto
###
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* installing to library ‘/home/biocbuild/bbs-3.3-bioc/R/library’
* installing *source* package ‘openCyto’ ...
** libs
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c misc.cpp -o misc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -c unlockNamespace.c -o unlockNamespace.o
g++ -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o openCyto.so RcppExports.o misc.o unlockNamespace.o -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.3-bioc/R/library/openCyto/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HowToWriteCSVTemplate.Rmd’ 
   ‘openCytoVignette.Rmd’ 
** testing if installed package can be loaded
* DONE (openCyto)