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BioC 3.3: BUILD report for msa on moscato2

This page was generated on 2016-10-13 12:54:00 -0700 (Thu, 13 Oct 2016).

Package 747/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msa 1.4.5
Ulrich Bodenhofer
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/msa
Last Changed Rev: 119988 / Revision: 122332
Last Changed Date: 2016-08-09 08:12:10 -0700 (Tue, 09 Aug 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: msa
Version: 1.4.5
Command: chmod a+r msa -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
StartedAt: 2016-10-12 23:27:42 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 23:50:36 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 1373.9 seconds
RetCode: 0
Status:  OK  
PackageFile: msa_1.4.5.tar.gz
PackageFileSize: 3.586 MiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r msa -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
###
##############################################################################
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* checking for file 'msa/DESCRIPTION' ... OK
* preparing 'msa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Warning: running command '"make" -f "E:/biocbld/bbs-3.3-bioc/R/share/make/clean.mk" -f Makevars.win clean' had status 2
* running 'cleanup.win'
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
Warning: running command '"make" -f "E:/biocbld/bbs-3.3-bioc/R/share/make/clean.mk" -f Makevars.win clean' had status 2
* running 'cleanup.win'
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'msa_1.4.5.tar.gz'
Warning: file 'msa/cleanup' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalOmega/configure' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalW/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/libatomic_ops/configure' did not have execute permissions: corrected