BioC 3.3: CHECK report for mAPKL on linux2.bioconductor.org

Package: mAPKL

Version: 1.3.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings mAPKL_1.3.0.tar.gz

StartedAt: 2015-10-27 05:23:58 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 05:35:21 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 683.4 seconds

RetCode: 0

Status:  OK

CheckDir: mAPKL.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings mAPKL_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/mAPKL.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mAPKL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mAPKL’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mAPKL’ can be installed ... [9s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [443s/443s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
mAPKL          137.312  0.036 137.557
classification 133.190  0.139 133.480
netwAttr       125.227  0.040 125.308
preprocess      36.942  0.024  37.015
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [142s/142s]
 [142s/142s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘mAPKL’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mAPKL)

name	user	system	elapsed
annotate	0.740	0.007	0.749
classification	133.190	0.139	133.480
mAPKL	137.312	0.036	137.557
metrics	0.002	0.000	0.002
netwAttr	125.227	0.040	125.308
preprocess	36.942	0.024	37.015
probes2pathways	1.682	0.024	1.710
report	0.001	0.000	0.001
sampling	1.649	0.012	1.664