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BioC 3.3: CHECK report for lpsymphony on zin2

This page was generated on 2016-10-13 12:46:16 -0700 (Thu, 13 Oct 2016).

Package 641/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lpsymphony 1.0.2
Vladislav Kim
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/lpsymphony
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lpsymphony
Version: 1.0.2
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings lpsymphony_1.0.2.tar.gz
StartedAt: 2016-10-13 03:47:44 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 03:53:59 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 375.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: lpsymphony.Rcheck
Warnings: 3

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings lpsymphony_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* this is package ‘lpsymphony’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  src/WinLib/i386/lpsymphony.dll src/WinLib/x64/lpsymphony.dll
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpsymphony’ can be installed ... WARNING
Found the following significant warnings:
  CoinMessageHandler.cpp:823:35: warning: format not a string literal and no format arguments [-Wformat-security]
See ‘/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Rglpk’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  src/SYMPHONY/Cgl/examples/Makefile
  src/SYMPHONY/Cgl/examples/Makefile.in
  src/SYMPHONY/Clp/examples/Makefile
  src/SYMPHONY/Clp/examples/Makefile.in
  src/SYMPHONY/Osi/examples/Makefile
  src/SYMPHONY/Osi/examples/Makefile.in
  src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile
  src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile.in
  src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile
  src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile.in
  src/SYMPHONY/SYMPHONY/Examples/FLOPC++/Makefile
  src/SYMPHONY/SYMPHONY/Examples/Makefile
  src/SYMPHONY/SYMPHONY/Examples/Makefile.in
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section ‘Writing portable packages’ in
the ‘Writing R Extensions’ manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... WARNING
'library' or 'require' call not declared from: ‘testthat’
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00check.log’
for details.

lpsymphony.Rcheck/00install.out:

* installing *source* package ‘lpsymphony’ ...
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long  
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long  
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC
checking if gcc -std=gnu99 PIC flag -fPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: Build is "x86_64-unknown-linux-gnu".
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CC=gcc -std=gnu99' 'CPP=gcc -std=gnu99 -E' 'CXX=g++' 'CXXCPP=g++ -E' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:6:10
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether isfinite is declared... no
checking whether finite is declared... no
checking whether _finite is declared... no
configure: WARNING: Cannot find C-function for checking Inf.
checking for cmath... (cached) yes
checking for cfloat... (cached) yes
checking for cieeefp... (cached) no
checking for ieeefp.h... (cached) no
checking whether isnan is declared... no
checking whether std::isnan(42.42) is declared... no
checking whether _isnan is declared... no
checking whether isnand is declared... no
configure: WARNING: Cannot find C-function for checking NaN.
checking cinttypes usability... no
checking cinttypes presence... no
checking for cinttypes... no
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking cstdint usability... no
checking cstdint presence... no
checking for cstdint... no
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int64_t... yes
checking for intptr_t... yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking whether -lblas has BLAS... yes: -lblas
checking whether LAPACK is already available with BLAS library... no
checking whether -llapack has LAPACK... yes: -llapack
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... yes
checking for latex... yes
checking for dot... YES
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating coinutils.pc
config.status: creating coinutils-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_coinutils.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of CoinUtils successful
configure: configuring in Osi
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CC=gcc -std=gnu99' 'CPP=gcc -std=gnu99 -E' 'CXX=g++' 'CXXCPP=g++ -E' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:4:12
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package SoPlex... not given: No package 'coinsoplex' found
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for Cplex... no
checking if user provides library for Mosek... no
checking if user provides library for Xpress... no
checking if user provides library for Gurobi... no
configure: WARNING: No solver available, examples will not work.
configure: configuring doxygen documentation options
checking for doxygen... yes
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Osi/Makefile
config.status: creating src/OsiCpx/Makefile
config.status: creating src/OsiGlpk/Makefile
config.status: creating src/OsiMsk/Makefile
config.status: creating src/OsiXpr/Makefile
config.status: creating src/OsiGrb/Makefile
config.status: creating src/OsiSpx/Makefile
config.status: creating src/OsiCommonTest/Makefile
config.status: creating test/Makefile
config.status: creating osi.pc
config.status: creating osi-uninstalled.pc
config.status: creating osi-unittests.pc
config.status: creating osi-unittests-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/Osi/config.h
config.status: creating src/Osi/config_osi.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Osi successful
configure: configuring in Clp
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CC=gcc -std=gnu99' 'CPP=gcc -std=gnu99 -E' 'CXX=g++' 'CXXCPP=g++ -E' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... none
checking dependency style of g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 14:6:13
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... yes: 1.2.10 
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Mumps... not given: No package 'coinmumps' found
checking for COIN-OR package ASL... not given: No package 'coinasl' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
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configure: configuring doxygen documentation options
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checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
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configure: creating ./config.status
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configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
configure: configuring in Cgl
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CC=gcc -std=gnu99' 'CPP=gcc -std=gnu99 -E' 'CXX=g++' 'CXXCPP=g++ -E' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
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checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD
checking for egrep... grep -E
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checking whether build environment is sane... yes
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checking whether make sets $(MAKE)... yes
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checking dependency style of gcc -std=gnu99... none
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configure: Using libtool script in directory ..
checking if library version is set... 10:4:9
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checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
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checking for COIN-OR package Sample... yes: 1.2.10 
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configure: configuring doxygen documentation options
checking for doxygen... yes
checking for latex... yes
checking for dot... YES
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
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configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Cgl successful
configure: configuring in SYMPHONY
configure: running /bin/bash './configure' --prefix=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CC=gcc -std=gnu99' 'CPP=gcc -std=gnu99 -E' 'CXX=g++' 'CXXCPP=g++ -E' 'F77=gfortran' 'FLIBS=-lgfortran -lm -lquadmath' --cache-file=/dev/null --srcdir=.
configure: loading site script /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... x86_64-unknown-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
configure: C compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wimplicit -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether C++ compiler g++ works... yes
configure: C++ compiler options are: -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD
checking for egrep... grep -E
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checking whether build environment is sane... yes
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checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... none
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configure: Using libtool script in directory ..
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checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinDepend... yes: 2.10.6 0.107.4 
checking for COIN-OR package Clp... yes: 1.16.6 
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configure: creating ./config.status
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configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of SYMPHONY successful
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Main configuration of SYMPHONY successful
** libs
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
Making all in CoinUtils
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make  all-am
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinAlloc.lo CoinAlloc.cpp
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 g++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinFactorization2.cpp  -fPIC -DPIC -o CoinFactorization2.o
CoinFactorization2.cpp: In member function 'int CoinFactorization::factorDense()':
CoinFactorization2.cpp:520:11: warning: conversion to 'CoinBigIndex {aka int}' from 'long unsigned int' may alter its value [-Wconversion]
   newSize += (numberDense_+1)/(sizeof(CoinFactorizationDouble)/sizeof(int));
           ^
CoinFactorization2.cpp:521:11: warning: conversion to 'CoinBigIndex {aka int}' from 'long unsigned int' may alter its value [-Wconversion]
   newSize += 2*((numberDense_+3)/(sizeof(CoinFactorizationDouble)/sizeof(short)));
           ^
CoinFactorization2.cpp:522:11: warning: conversion to 'CoinBigIndex {aka int}' from 'long unsigned int' may alter its value [-Wconversion]
   newSize += ((numberRows_+3)/(sizeof(CoinFactorizationDouble)/sizeof(short)));
           ^
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD -c -o CoinFactorization3.lo CoinFactorization3.cpp
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CoinFactorization3.cpp: In member function 'void CoinFactorization::updateColumnLSparsish(CoinIndexedVector*, int*) const':
CoinFactorization3.cpp:401:36: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
   int nInBig = sizeof(CoinBigIndex)/sizeof(int);
                                    ^
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CoinFactorization4.cpp: In member function 'void CoinFactorization::updateColumnTransposeUSparsish(CoinIndexedVector*, int) const':
CoinFactorization4.cpp:936:36: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
   int nInBig = sizeof(CoinBigIndex)/sizeof(int);
                                    ^
CoinFactorization4.cpp: In member function 'void CoinFactorization::updateColumnTransposeLSparsish(CoinIndexedVector*) const':
CoinFactorization4.cpp:1301:36: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
   int nInBig = sizeof(CoinBigIndex)/sizeof(int);
                                    ^
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CoinLpIO.cpp: In member function 'void CoinLpIO::readLp(FILE*)':
CoinLpIO.cpp:2264:29: warning: conversion to 'int' from 'size_t {aka long unsigned int}' may alter its value [-Wconversion]
       int length=strlen(buff);
                             ^
CoinLpIO.cpp:2316:31: warning: conversion to 'int' from 'size_t {aka long unsigned int}' may alter its value [-Wconversion]
       int length=strlen(next+1);
                               ^
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CoinMessage.cpp: In constructor 'CoinMessage::CoinMessage(CoinMessages::Language)':
CoinMessage.cpp:77:34: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
   CoinMessages(sizeof(us_english)/sizeof(Coin_message))
                                  ^
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CoinMessageHandler.cpp: In member function 'CoinMessageHandler& CoinMessageHandler::operator<<(double)':
CoinMessageHandler.cpp:823:35: warning: format not a string literal and no format arguments [-Wformat-security]
      sprintf(messageOut_,format_+2);
                                   ^
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CoinStructuredModel.cpp: In member function 'int CoinStructuredModel::decompose(const CoinPackedMatrix&, const double*, const double*, const double*, const double*, const double*, int, int, int*, double)':
CoinStructuredModel.cpp:761:10: warning: variable 'goodDW' set but not used [-Wunused-but-set-variable]
     bool goodDW=true;
          ^
CoinStructuredModel.cpp:1343:10: warning: variable 'goodBenders' set but not used [-Wunused-but-set-variable]
     bool goodBenders=true;
          ^
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CoinPresolveDual.cpp: In static member function 'static const CoinPresolveAction* remove_dual_action::presolve(CoinPresolveMatrix*, const CoinPresolveAction*)':
CoinPresolveDual.cpp:236:20: warning: unused variable 'lb' [-Wunused-variable]
       const double lb = clo[icol] ;
                    ^
CoinPresolveDual.cpp:237:20: warning: unused variable 'ub' [-Wunused-variable]
       const double ub = cup[icol] ;
                    ^
CoinPresolveDual.cpp:642:13: warning: unused variable 'no_clb' [-Wunused-variable]
  const bool no_clb = (active[j]&5)==0 ;
             ^
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CoinRational.cpp: In member function 'bool CoinRational::nearestRational_(double, double, long int)':
CoinRational.cpp:30:27: warning: conversion to 'double' from 'long int' may alter its value [-Wconversion]
       double mediant = (a + c)/(double(b + d));
                           ^
CoinRational.cpp:60:30: warning: conversion to 'long int' from 'double' may alter its value [-Wconversion]
    numerator_ += labs(intpart) * denominator_;
                              ^
CoinRational.cpp:64:52: warning: conversion to 'double' from 'long int' may alter its value [-Wconversion]
    return fabs(val - numerator_/double(denominator_)) <= maxdelta;
                                                    ^
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 g++ -DHAVE_CONFIG_H -I. -I. -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD -c CoinWarmStartPrimalDual.cpp  -fPIC -DPIC -o CoinWarmStartPrimalDual.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCOINUTILS_BUILD   -o libCoinUtils.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:6:10 CoinAlloc.lo CoinBuild.lo CoinDenseVector.lo CoinError.lo CoinFactorization1.lo CoinFactorization2.lo CoinFactorization3.lo CoinFactorization4.lo CoinSimpFactorization.lo CoinDenseFactorization.lo CoinOslFactorization.lo CoinOslFactorization2.lo CoinOslFactorization3.lo CoinFileIO.lo CoinFinite.lo CoinIndexedVector.lo CoinLpIO.lo CoinMessage.lo CoinMessageHandler.lo CoinModel.lo CoinStructuredModel.lo CoinModelUseful.lo CoinModelUseful2.lo CoinMpsIO.lo CoinPackedMatrix.lo CoinPackedVector.lo CoinPackedVectorBase.lo CoinParam.lo CoinParamUtils.lo CoinPostsolveMatrix.lo CoinPrePostsolveMatrix.lo CoinPresolveDoubleton.lo CoinPresolveDual.lo CoinPresolveDupcol.lo CoinPresolveEmpty.lo CoinPresolveFixed.lo CoinPresolveForcing.lo CoinPresolveHelperFunctions.lo CoinPresolveImpliedFree.lo CoinPresolveIsolated.lo CoinPresolveMatrix.lo CoinPresolvePsdebug.lo CoinPresolveMonitor.lo CoinPresolveSingleton.lo CoinPresolveSubst.lo CoinPresolveTighten.lo CoinPresolveTripleton.lo CoinPresolveUseless.lo CoinPresolveZeros.lo CoinRational.lo CoinSearchTree.lo CoinShallowPackedVector.lo CoinSnapshot.lo CoinWarmStartBasis.lo CoinWarmStartVector.lo CoinWarmStartDual.lo CoinWarmStartPrimalDual.lo -llapack -lblas -lm  
mkdir .libs
ar cru .libs/libCoinUtils.a  CoinAlloc.o CoinBuild.o CoinDenseVector.o CoinError.o CoinFactorization1.o CoinFactorization2.o CoinFactorization3.o CoinFactorization4.o CoinSimpFactorization.o CoinDenseFactorization.o CoinOslFactorization.o CoinOslFactorization2.o CoinOslFactorization3.o CoinFileIO.o CoinFinite.o CoinIndexedVector.o CoinLpIO.o CoinMessage.o CoinMessageHandler.o CoinModel.o CoinStructuredModel.o CoinModelUseful.o CoinModelUseful2.o CoinMpsIO.o CoinPackedMatrix.o CoinPackedVector.o CoinPackedVectorBase.o CoinParam.o CoinParamUtils.o CoinPostsolveMatrix.o CoinPrePostsolveMatrix.o CoinPresolveDoubleton.o CoinPresolveDual.o CoinPresolveDupcol.o CoinPresolveEmpty.o CoinPresolveFixed.o CoinPresolveForcing.o CoinPresolveHelperFunctions.o CoinPresolveImpliedFree.o CoinPresolveIsolated.o CoinPresolveMatrix.o CoinPresolvePsdebug.o CoinPresolveMonitor.o CoinPresolveSingleton.o CoinPresolveSubst.o CoinPresolveTighten.o CoinPresolveTripleton.o CoinPresolveUseless.o CoinPresolveZeros.o CoinRational.o CoinSearchTree.o CoinShallowPackedVector.o CoinSnapshot.o CoinWarmStartBasis.o CoinWarmStartVector.o CoinWarmStartDual.o CoinWarmStartPrimalDual.o
ranlib .libs/libCoinUtils.a
creating libCoinUtils.la
(cd .libs && rm -f libCoinUtils.la && ln -s ../libCoinUtils.la libCoinUtils.la)
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make[3]: Nothing to be done for `all-am'.
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Making all in Osi
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Making all in src/Osi
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCut.lo OsiRowCut.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutDebugger.lo OsiRowCutDebugger.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutDebugger.cpp  -fPIC -DPIC -o OsiRowCutDebugger.o
OsiRowCutDebugger.cpp: In member function 'bool OsiRowCutDebugger::activate(const OsiSolverInterface&, const char*)':
OsiRowCutDebugger.cpp:319:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:329:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:338:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:347:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:356:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:365:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:374:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:383:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:395:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:406:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:416:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:427:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:445:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:462:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:475:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:485:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:497:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:509:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:520:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:532:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:543:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:554:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:563:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:573:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:584:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:594:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:603:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:612:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:627:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:648:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:665:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:718:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:727:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:737:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:747:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:759:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:769:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:778:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:826:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:887:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:904:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:924:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:965:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1007:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1049:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1097:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1107:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1130:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1152:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1164:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1175:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1186:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1197:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1207:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1219:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1230:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
OsiRowCutDebugger.cpp:1244:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1258:37: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int vecLen = sizeof(intIndicesV)/sizeof(int);
                                     ^
OsiRowCutDebugger.cpp:1268:43: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
     int numIndices = sizeof(intIndicesAt1)/sizeof(int);
                                           ^
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverBranch.lo OsiSolverBranch.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverBranch.cpp  -fPIC -DPIC -o OsiSolverBranch.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverInterface.lo OsiSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverInterface.cpp  -fPIC -DPIC -o OsiSolverInterface.o
OsiSolverInterface.cpp: In member function 'int OsiSolverInterface::differentModel(OsiSolverInterface&, bool)':
OsiSolverInterface.cpp:1880:8: warning: unused variable 'gotHint' [-Wunused-variable]
   bool gotHint = (getHintParam(OsiDoReducePrint,takeHint,strength));
        ^
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD   -o libOsi.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiAuxInfo.lo OsiBranchingObject.lo OsiChooseVariable.lo OsiColCut.lo OsiCut.lo OsiCuts.lo OsiNames.lo OsiPresolve.lo OsiRowCut.lo OsiRowCutDebugger.lo OsiSolverBranch.lo OsiSolverInterface.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    
mkdir .libs
ar cru .libs/libOsi.a  OsiAuxInfo.o OsiBranchingObject.o OsiChooseVariable.o OsiColCut.o OsiCut.o OsiCuts.o OsiNames.o OsiPresolve.o OsiRowCut.o OsiRowCutDebugger.o OsiSolverBranch.o OsiSolverInterface.o
ranlib .libs/libOsi.a
creating libOsi.la
(cd .libs && rm -f libOsi.la && ln -s ../libOsi.la libOsi.la)
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
Making all in src/OsiCommonTest
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiColCutTest.lo OsiColCutTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiColCutTest.cpp  -fPIC -DPIC -o OsiColCutTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiCutsTest.lo OsiCutsTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiCutsTest.cpp  -fPIC -DPIC -o OsiCutsTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutDebuggerTest.lo OsiRowCutDebuggerTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutDebuggerTest.cpp  -fPIC -DPIC -o OsiRowCutDebuggerTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiRowCutTest.lo OsiRowCutTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiRowCutTest.cpp  -fPIC -DPIC -o OsiRowCutTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSimplexAPITest.lo OsiSimplexAPITest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSimplexAPITest.cpp  -fPIC -DPIC -o OsiSimplexAPITest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiNetlibTest.lo OsiNetlibTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiNetlibTest.cpp  -fPIC -DPIC -o OsiNetlibTest.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiUnitTestUtils.lo OsiUnitTestUtils.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiUnitTestUtils.cpp  -fPIC -DPIC -o OsiUnitTestUtils.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../src/Osi  -I`echo ./../Osi` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD -c -o OsiSolverInterfaceTest.lo OsiSolverInterfaceTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../src/Osi -I./../Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DOSI_BUILD -c OsiSolverInterfaceTest.cpp  -fPIC -DPIC -o OsiSolverInterfaceTest.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DOSI_BUILD   -o libOsiCommonTests.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiColCutTest.lo OsiCutsTest.lo OsiRowCutDebuggerTest.lo OsiRowCutTest.lo OsiSimplexAPITest.lo OsiNetlibTest.lo OsiUnitTestUtils.lo OsiSolverInterfaceTest.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    ../Osi/libOsi.la 
mkdir .libs
ar cru .libs/libOsiCommonTests.a  OsiColCutTest.o OsiCutsTest.o OsiRowCutDebuggerTest.o OsiRowCutTest.o OsiSimplexAPITest.o OsiNetlibTest.o OsiUnitTestUtils.o OsiSolverInterfaceTest.o
ranlib .libs/libOsiCommonTests.a
creating libOsiCommonTests.la
(cd .libs && rm -f libOsiCommonTests.la && ln -s ../libOsiCommonTests.la libOsiCommonTests.la)
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making all in Clp
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making all in src
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ClpMessage.cpp: In constructor 'ClpMessage::ClpMessage(CoinMessages::Language)':
ClpMessage.cpp:128:42: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
      CoinMessages(sizeof(clp_us_english) / sizeof(Clp_message))
                                          ^
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             ^
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ClpSimplex.cpp: In member function 'int ClpSimplex::fathom(void*)':
ClpSimplex.cpp:11081:15: warning: unused variable 'statusWeights' [-Wunused-variable]
           int statusWeights = fastDual2(info);
               ^
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ClpSimplexOther.cpp: In member function 'int ClpSimplexOther::setInDual(ClpSimplex*)':
ClpSimplexOther.cpp:1313:12: warning: unused variable 'statusD' [-Wunused-variable]
     Status statusD = dualProblem->getRowStatus(iColumn);
            ^
ClpSimplexOther.cpp:1314:12: warning: unused variable 'statusDJ' [-Wunused-variable]
     Status statusDJ = dualProblem->getColumnStatus(jColumn);
            ^
ClpSimplexOther.cpp:1352:12: warning: unused variable 'statusD' [-Wunused-variable]
     Status statusD = dualProblem->getColumnStatus(iRow);
            ^
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSimplexPrimal.lo ClpSimplexPrimal.cpp
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/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSolve.lo ClpSolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSolve.cpp  -fPIC -DPIC -o ClpSolve.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o Idiot.lo Idiot.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c Idiot.cpp  -fPIC -DPIC -o Idiot.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o IdiSolve.lo IdiSolve.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c IdiSolve.cpp  -fPIC -DPIC -o IdiSolve.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libClp.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpCholeskyBase.lo ClpCholeskyDense.lo ClpConstraint.lo ClpConstraintLinear.lo ClpConstraintQuadratic.lo Clp_C_Interface.lo ClpDualRowDantzig.lo ClpDualRowPivot.lo ClpDualRowSteepest.lo ClpDummyMatrix.lo ClpDynamicExampleMatrix.lo ClpDynamicMatrix.lo ClpEventHandler.lo ClpFactorization.lo ClpGubDynamicMatrix.lo ClpGubMatrix.lo ClpHelperFunctions.lo ClpInterior.lo ClpLinearObjective.lo ClpMatrixBase.lo ClpMessage.lo ClpModel.lo ClpNetworkBasis.lo ClpNetworkMatrix.lo ClpNonLinearCost.lo ClpNode.lo ClpObjective.lo ClpPackedMatrix.lo ClpPlusMinusOneMatrix.lo ClpPredictorCorrector.lo ClpPdco.lo ClpPdcoBase.lo ClpLsqr.lo ClpPresolve.lo ClpPrimalColumnDantzig.lo ClpPrimalColumnPivot.lo ClpPrimalColumnSteepest.lo ClpQuadraticObjective.lo ClpSimplex.lo ClpSimplexDual.lo ClpSimplexNonlinear.lo ClpSimplexOther.lo ClpSimplexPrimal.lo ClpSolve.lo Idiot.lo IdiSolve.lo       /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    
mkdir .libs
ar cru .libs/libClp.a  ClpCholeskyBase.o ClpCholeskyDense.o ClpConstraint.o ClpConstraintLinear.o ClpConstraintQuadratic.o Clp_C_Interface.o ClpDualRowDantzig.o ClpDualRowPivot.o ClpDualRowSteepest.o ClpDummyMatrix.o ClpDynamicExampleMatrix.o ClpDynamicMatrix.o ClpEventHandler.o ClpFactorization.o ClpGubDynamicMatrix.o ClpGubMatrix.o ClpHelperFunctions.o ClpInterior.o ClpLinearObjective.o ClpMatrixBase.o ClpMessage.o ClpModel.o ClpNetworkBasis.o ClpNetworkMatrix.o ClpNonLinearCost.o ClpNode.o ClpObjective.o ClpPackedMatrix.o ClpPlusMinusOneMatrix.o ClpPredictorCorrector.o ClpPdco.o ClpPdcoBase.o ClpLsqr.o ClpPresolve.o ClpPrimalColumnDantzig.o ClpPrimalColumnPivot.o ClpPrimalColumnSteepest.o ClpQuadraticObjective.o ClpSimplex.o ClpSimplexDual.o ClpSimplexNonlinear.o ClpSimplexOther.o ClpSimplexPrimal.o ClpSolve.o Idiot.o IdiSolve.o
ranlib .libs/libClp.a
creating libClp.la
(cd .libs && rm -f libClp.la && ln -s ../libClp.la libClp.la)
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpSolver.lo ClpSolver.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c ClpSolver.cpp  -fPIC -DPIC -o ClpSolver.o
ClpSolver.cpp: In function 'void statistics(ClpSimplex*, ClpSimplex*)':
ClpSolver.cpp:3756:10: warning: variable 'numberWritten' set but not used [-Wunused-but-set-variable]
   size_t numberWritten;
          ^
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o CbcOrClpParam.lo CbcOrClpParam.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c CbcOrClpParam.cpp  -fPIC -DPIC -o CbcOrClpParam.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o Clp_ampl.lo Clp_ampl.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c Clp_ampl.cpp  -fPIC -DPIC -o Clp_ampl.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o MyEventHandler.lo MyEventHandler.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c MyEventHandler.cpp  -fPIC -DPIC -o MyEventHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o MyMessageHandler.lo MyMessageHandler.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c MyMessageHandler.cpp  -fPIC -DPIC -o MyMessageHandler.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o unitTest.lo unitTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c unitTest.cpp  -fPIC -DPIC -o unitTest.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libClpSolver.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpSolver.lo CbcOrClpParam.lo Clp_ampl.lo MyEventHandler.lo MyMessageHandler.lo unitTest.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    libClp.la 
ar cru .libs/libClpSolver.a  ClpSolver.o CbcOrClpParam.o Clp_ampl.o MyEventHandler.o MyMessageHandler.o unitTest.o
ranlib .libs/libClpSolver.a
creating libClpSolver.la
(cd .libs && rm -f libClpSolver.la && ln -s ../libClpSolver.la libClpSolver.la)
g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -DCOIN_HAS_CLP     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o ClpMain.o ClpMain.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o clp  ClpMain.o libClpSolver.la libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm     
g++ -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -o clp ClpMain.o  ./.libs/libClpSolver.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a ./.libs/libClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -llapack -lblas -lm
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
Making all in src/OsiClp
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD -c -o OsiClpSolverInterface.lo OsiClpSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCLP_BUILD -c OsiClpSolverInterface.cpp  -fPIC -DPIC -o OsiClpSolverInterface.o
OsiClpSolverInterface.cpp: In member function 'virtual void OsiClpSolverInterface::initialSolve()':
OsiClpSolverInterface.cpp:148:8: warning: variable 'gotHint' set but not used [-Wunused-but-set-variable]
   bool gotHint = (getHintParam(OsiDoReducePrint,takeHint,strength));
        ^
OsiClpSolverInterface.cpp: In member function 'virtual void OsiClpSolverInterface::resolve()':
OsiClpSolverInterface.cpp:843:8: warning: variable 'gotHint' set but not used [-Wunused-but-set-variable]
   bool gotHint = (getHintParam(OsiDoInBranchAndCut,takeHint,strength));
        ^
OsiClpSolverInterface.cpp: In member function 'int OsiClpSolverInterface::infeasibleOtherWay(char*)':
OsiClpSolverInterface.cpp:9967:22: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    whichWay[iColumn] *=2;
                      ^
OsiClpSolverInterface.cpp:9972:22: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    whichWay[iColumn] *=2;
                      ^
OsiClpSolverInterface.cpp:9822:7: warning: unused variable 'iRow' [-Wunused-variable]
   int iRow,iColumn;
       ^
OsiClpSolverInterface.cpp:9840:17: warning: unused variable 'objective' [-Wunused-variable]
   const double *objective = getObjCoefficients() ;
                 ^
OsiClpSolverInterface.cpp:9841:10: warning: unused variable 'direction' [-Wunused-variable]
   double direction = getObjSense();
          ^
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCLP_BUILD   -o libOsiClp.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 OsiClpSolverInterface.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    ../libClp.la 
mkdir .libs
ar cru .libs/libOsiClp.a  OsiClpSolverInterface.o
ranlib .libs/libOsiClp.a
creating libOsiClp.la
(cd .libs && rm -f libOsiClp.la && ln -s ../libOsiClp.la libOsiClp.la)
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making all in Cgl
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make  all-recursive
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
Making all in CglAllDifferent
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglAllDifferent.lo CglAllDifferent.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglAllDifferent.cpp  -fPIC -DPIC -o CglAllDifferent.o
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Making all in CglDuplicateRow
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Making all in CglFlowCover
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Making all in CglGMI
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CglGMI.cpp: In member function 'bool CglGMI::scaleCutIntegral(double*, int*, int, double&)':
CglGMI.cpp:891:8: warning: unused variable 'numerator' [-Wunused-variable]
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        ^
CglGMI.cpp:891:23: warning: unused variable 'denominator' [-Wunused-variable]
   long numerator = 0, denominator = 0;
                       ^
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/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglMixedIntegerRounding2.la  -no-undefined -version-info 10:4:9 CglMixedIntegerRounding2.lo CglMixedIntegerRounding2Test.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglMixedIntegerRounding2.a  CglMixedIntegerRounding2.o CglMixedIntegerRounding2Test.o
ranlib .libs/libCglMixedIntegerRounding2.a
creating libCglMixedIntegerRounding2.la
(cd .libs && rm -f libCglMixedIntegerRounding2.la && ln -s ../libCglMixedIntegerRounding2.la libCglMixedIntegerRounding2.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
Making all in CglOddHole
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglOddHole.lo CglOddHole.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglOddHole.cpp  -fPIC -DPIC -o CglOddHole.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglOddHoleTest.lo CglOddHoleTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglOddHoleTest.cpp  -fPIC -DPIC -o CglOddHoleTest.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglOddHole.la  -no-undefined -version-info 10:4:9 CglOddHole.lo CglOddHoleTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglOddHole.a  CglOddHole.o CglOddHoleTest.o
ranlib .libs/libCglOddHole.a
creating libCglOddHole.la
(cd .libs && rm -f libCglOddHole.la && ln -s ../libCglOddHole.la libCglOddHole.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
Making all in CglPreProcess
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglProbing` -I`echo ./../CglDuplicateRow` -I`echo ./../CglClique` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglPreProcess.lo CglPreProcess.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I./../CglProbing -I./../CglDuplicateRow -I./../CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglPreProcess.cpp  -fPIC -DPIC -o CglPreProcess.o
In file included from ../CglTreeInfo.hpp:11:0,
                 from ../CglCutGenerator.hpp:10,
                 from ../CglStored.hpp:11,
                 from CglPreProcess.hpp:13,
                 from CglPreProcess.cpp:13:
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp: In member function 'OsiSolverInterface* CglPreProcess::modified(OsiSolverInterface*, bool, int&, int, int)':
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:550:29: warning: 'colLower[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
     return (x1 > x2) ? x1 : x2;
                             ^
CglPreProcess.cpp:4157:12: note: 'colLower[1]' was declared here
     double colLower[TRIPLE_COLS],colUpper[TRIPLE_COLS];
            ^
In file included from ../CglTreeInfo.hpp:11:0,
                 from ../CglCutGenerator.hpp:10,
                 from ../CglStored.hpp:11,
                 from CglPreProcess.hpp:13,
                 from CglPreProcess.cpp:13:
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp:561:29: warning: 'colUpper[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
     return (x1 < x2) ? x1 : x2;
                             ^
CglPreProcess.cpp:4157:34: note: 'colUpper[1]' was declared here
     double colLower[TRIPLE_COLS],colUpper[TRIPLE_COLS];
                                  ^
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglPreProcess.la  -no-undefined -version-info 10:4:9 CglPreProcess.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglPreProcess.a  CglPreProcess.o
ranlib .libs/libCglPreProcess.a
creating libCglPreProcess.la
(cd .libs && rm -f libCglPreProcess.la && ln -s ../libCglPreProcess.la libCglPreProcess.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
Making all in CglProbing
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglProbing.lo CglProbing.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglProbing.cpp  -fPIC -DPIC -o CglProbing.o
CglProbing.cpp: In member function 'int CglProbing::probe(const OsiSolverInterface&, const OsiRowCutDebugger*, OsiCuts&, double*, double*, CoinPackedMatrix*, CoinPackedMatrix*, const CoinBigIndex*, const int*, const double*, const double*, const char*, double*, double*, int*, CglTreeInfo*)':
CglProbing.cpp:2955:40: warning: conversion to 'unsigned int' from 'long unsigned int' may alter its value [-Wconversion]
   unsigned int DIratio = sizeof(double)/sizeof(int);
                                        ^
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglProbingTest.lo CglProbingTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglProbingTest.cpp  -fPIC -DPIC -o CglProbingTest.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglProbing.la  -no-undefined -version-info 10:4:9 CglProbing.lo CglProbingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglProbing.a  CglProbing.o CglProbingTest.o
ranlib .libs/libCglProbing.a
creating libCglProbing.la
(cd .libs && rm -f libCglProbing.la && ln -s ../libCglProbing.la libCglProbing.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
Making all in CglRedSplit
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplit.lo CglRedSplit.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplit.cpp  -fPIC -DPIC -o CglRedSplit.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplitTest.lo CglRedSplitTest.cpp
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/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglRedSplitParam.lo CglRedSplitParam.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglRedSplitParam.cpp  -fPIC -DPIC -o CglRedSplitParam.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglRedSplit.la  -no-undefined -version-info 10:4:9 CglRedSplit.lo CglRedSplitTest.lo CglRedSplitParam.lo  
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libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
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ranlib .libs/libCglRedSplit.a
creating libCglRedSplit.la
(cd .libs && rm -f libCglRedSplit.la && ln -s ../libCglRedSplit.la libCglRedSplit.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
Making all in CglRedSplit2
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Making all in CglResidualCapacity
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creating libCglResidualCapacity.la
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Making all in CglSimpleRounding
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Making all in CglTwomir
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CglTwomir.cpp: In member function 'virtual void CglTwomir::generateCuts(const OsiSolverInterface&, OsiCuts&, CglTreeInfo)':
CglTwomir.cpp:487:13: warning: 'numberOriginalRows' may be used uninitialized in this function [-Wmaybe-uninitialized]
  delRow[i]=i+numberOriginalRows;
             ^
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Making all in CglZeroHalf
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglZeroHalf.lo CglZeroHalf.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglZeroHalf.cpp  -fPIC -DPIC -o CglZeroHalf.o
CglZeroHalf.cpp: In member function 'virtual void CglZeroHalf::refreshSolver(OsiSolverInterface*)':
CglZeroHalf.cpp:376:7: warning: unused variable 'saveMr' [-Wunused-variable]
   int saveMr=mr_;
       ^
CglZeroHalf.cpp:377:7: warning: unused variable 'saveMnz' [-Wunused-variable]
   int saveMnz=mnz_;
       ^
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o Cgl012cut.lo Cgl012cut.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c Cgl012cut.cpp  -fPIC -DPIC -o Cgl012cut.o
Cgl012cut.cpp: In member function 'cut_list* Cgl012Cut::basic_separation()':
Cgl012cut.cpp:2146:20: warning: conversion to 'short int' from 'int' may alter its value [-Wconversion]
          FALSE,TRUE); 
                    ^
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglZeroHalfTest.lo CglZeroHalfTest.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I./.. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglZeroHalfTest.cpp  -fPIC -DPIC -o CglZeroHalfTest.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCglZeroHalf.la  -no-undefined -version-info 10:4:9 CglZeroHalf.lo Cgl012cut.lo CglZeroHalfTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglZeroHalf.a  CglZeroHalf.o Cgl012cut.o CglZeroHalfTest.o
ranlib .libs/libCglZeroHalf.a
creating libCglZeroHalf.la
(cd .libs && rm -f libCglZeroHalf.la && ln -s ../libCglZeroHalf.la libCglZeroHalf.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglCutGenerator.lo CglCutGenerator.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglCutGenerator.cpp  -fPIC -DPIC -o CglCutGenerator.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglMessage.lo CglMessage.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglMessage.cpp  -fPIC -DPIC -o CglMessage.o
CglMessage.cpp: In constructor 'CglMessage::CglMessage(CoinMessages::Language)':
CglMessage.cpp:38:34: warning: conversion to 'int' from 'long unsigned int' may alter its value [-Wconversion]
   CoinMessages(sizeof(us_english)/sizeof(Cgl_message))
                                  ^
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglStored.lo CglStored.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglStored.cpp  -fPIC -DPIC -o CglStored.o
CglStored.cpp: In constructor 'CglStored::CglStored(const char*)':
CglStored.cpp:293:33: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&n,sizeof(int),1,fp);
                                 ^
CglStored.cpp:308:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(rhs,sizeof(double),2,fp);
                                     ^
CglStored.cpp:310:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(index,sizeof(int),n,fp);
                                    ^
CglStored.cpp:311:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(coefficient,sizeof(double),n,fp);
                                             ^
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglParam.lo CglParam.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglParam.cpp  -fPIC -DPIC -o CglParam.o
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD -c -o CglTreeInfo.lo CglTreeInfo.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DCGL_BUILD -c CglTreeInfo.cpp  -fPIC -DPIC -o CglTreeInfo.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DCGL_BUILD   -o libCgl.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 10:4:9 CglCutGenerator.lo CglMessage.lo CglStored.lo CglParam.lo CglTreeInfo.lo CglAllDifferent/libCglAllDifferent.la CglClique/libCglClique.la CglDuplicateRow/libCglDuplicateRow.la CglFlowCover/libCglFlowCover.la CglGMI/libCglGMI.la CglGomory/libCglGomory.la CglKnapsackCover/libCglKnapsackCover.la CglLandP/libCglLandP.la CglLiftAndProject/libCglLiftAndProject.la CglMixedIntegerRounding/libCglMixedIntegerRounding.la CglMixedIntegerRounding2/libCglMixedIntegerRounding2.la CglOddHole/libCglOddHole.la CglPreProcess/libCglPreProcess.la CglProbing/libCglProbing.la CglRedSplit/libCglRedSplit.la CglRedSplit2/libCglRedSplit2.la CglResidualCapacity/libCglResidualCapacity.la CglSimpleRounding/libCglSimpleRounding.la CglTwomir/libCglTwomir.la CglZeroHalf/libCglZeroHalf.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    
mkdir .libs
rm -fr .libs/libCgl.lax
mkdir .libs/libCgl.lax
rm -fr .libs/libCgl.lax/libCglAllDifferent.a
mkdir .libs/libCgl.lax/libCglAllDifferent.a
(cd .libs/libCgl.lax/libCglAllDifferent.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a)
rm -fr .libs/libCgl.lax/libCglClique.a
mkdir .libs/libCgl.lax/libCglClique.a
(cd .libs/libCgl.lax/libCglClique.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a)
rm -fr .libs/libCgl.lax/libCglDuplicateRow.a
mkdir .libs/libCgl.lax/libCglDuplicateRow.a
(cd .libs/libCgl.lax/libCglDuplicateRow.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a)
rm -fr .libs/libCgl.lax/libCglFlowCover.a
mkdir .libs/libCgl.lax/libCglFlowCover.a
(cd .libs/libCgl.lax/libCglFlowCover.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a)
rm -fr .libs/libCgl.lax/libCglGMI.a
mkdir .libs/libCgl.lax/libCglGMI.a
(cd .libs/libCgl.lax/libCglGMI.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a)
rm -fr .libs/libCgl.lax/libCglGomory.a
mkdir .libs/libCgl.lax/libCglGomory.a
(cd .libs/libCgl.lax/libCglGomory.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a)
rm -fr .libs/libCgl.lax/libCglKnapsackCover.a
mkdir .libs/libCgl.lax/libCglKnapsackCover.a
(cd .libs/libCgl.lax/libCglKnapsackCover.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a)
rm -fr .libs/libCgl.lax/libCglLandP.a
mkdir .libs/libCgl.lax/libCglLandP.a
(cd .libs/libCgl.lax/libCglLandP.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a)
rm -fr .libs/libCgl.lax/libCglLiftAndProject.a
mkdir .libs/libCgl.lax/libCglLiftAndProject.a
(cd .libs/libCgl.lax/libCglLiftAndProject.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding2.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding2.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding2.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a)
rm -fr .libs/libCgl.lax/libCglOddHole.a
mkdir .libs/libCgl.lax/libCglOddHole.a
(cd .libs/libCgl.lax/libCglOddHole.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a)
rm -fr .libs/libCgl.lax/libCglPreProcess.a
mkdir .libs/libCgl.lax/libCglPreProcess.a
(cd .libs/libCgl.lax/libCglPreProcess.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a)
rm -fr .libs/libCgl.lax/libCglProbing.a
mkdir .libs/libCgl.lax/libCglProbing.a
(cd .libs/libCgl.lax/libCglProbing.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a)
rm -fr .libs/libCgl.lax/libCglRedSplit.a
mkdir .libs/libCgl.lax/libCglRedSplit.a
(cd .libs/libCgl.lax/libCglRedSplit.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a)
rm -fr .libs/libCgl.lax/libCglRedSplit2.a
mkdir .libs/libCgl.lax/libCglRedSplit2.a
(cd .libs/libCgl.lax/libCglRedSplit2.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a)
rm -fr .libs/libCgl.lax/libCglResidualCapacity.a
mkdir .libs/libCgl.lax/libCglResidualCapacity.a
(cd .libs/libCgl.lax/libCglResidualCapacity.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a)
rm -fr .libs/libCgl.lax/libCglSimpleRounding.a
mkdir .libs/libCgl.lax/libCglSimpleRounding.a
(cd .libs/libCgl.lax/libCglSimpleRounding.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a)
rm -fr .libs/libCgl.lax/libCglTwomir.a
mkdir .libs/libCgl.lax/libCglTwomir.a
(cd .libs/libCgl.lax/libCglTwomir.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a)
rm -fr .libs/libCgl.lax/libCglZeroHalf.a
mkdir .libs/libCgl.lax/libCglZeroHalf.a
(cd .libs/libCgl.lax/libCglZeroHalf.a && ar x /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a)
ar cru .libs/libCgl.a  CglCutGenerator.o CglMessage.o CglStored.o CglParam.o CglTreeInfo.o  .libs/libCgl.lax/libCglAllDifferent.a/CglAllDifferent.o  .libs/libCgl.lax/libCglClique.a/CglCliqueHelper.o .libs/libCgl.lax/libCglClique.a/CglCliqueTest.o .libs/libCgl.lax/libCglClique.a/CglClique.o  .libs/libCgl.lax/libCglDuplicateRow.a/CglDuplicateRow.o  .libs/libCgl.lax/libCglFlowCover.a/CglFlowCover.o .libs/libCgl.lax/libCglFlowCover.a/CglFlowCoverTest.o  .libs/libCgl.lax/libCglGMI.a/CglGMIParam.o .libs/libCgl.lax/libCglGMI.a/CglGMI.o  .libs/libCgl.lax/libCglGomory.a/CglGomoryTest.o .libs/libCgl.lax/libCglGomory.a/CglGomory.o  .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCover.o .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCoverTest.o  .libs/libCgl.lax/libCglLandP.a/CglLandP.o .libs/libCgl.lax/libCglLandP.a/CglLandPTest.o .libs/libCgl.lax/libCglLandP.a/CglLandPTabRow.o .libs/libCgl.lax/libCglLandP.a/CglLandPSimplex.o .libs/libCgl.lax/libCglLandP.a/CglLandPMessages.o .libs/libCgl.lax/libCglLandP.a/CglLandPUtils.o .libs/libCgl.lax/libCglLandP.a/CglLandPValidator.o  .libs/libCgl.lax/libCglLiftAndProject.a/CglLiftAndProject.o  .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRoundingTest.o .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRounding.o  .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2Test.o .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2.o  .libs/libCgl.lax/libCglOddHole.a/CglOddHoleTest.o .libs/libCgl.lax/libCglOddHole.a/CglOddHole.o  .libs/libCgl.lax/libCglPreProcess.a/CglPreProcess.o  .libs/libCgl.lax/libCglProbing.a/CglProbing.o .libs/libCgl.lax/libCglProbing.a/CglProbingTest.o  .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitTest.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplit.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitParam.o  .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Param.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Test.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2.o  .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacityTest.o .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacity.o  .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRounding.o .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRoundingTest.o  .libs/libCgl.lax/libCglTwomir.a/CglTwomirTest.o .libs/libCgl.lax/libCglTwomir.a/CglTwomir.o  .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalfTest.o .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalf.o .libs/libCgl.lax/libCglZeroHalf.a/Cgl012cut.o 
ranlib .libs/libCgl.a
rm -fr .libs/libCgl.lax
creating libCgl.la
(cd .libs && rm -f libCgl.la && ln -s ../libCgl.la libCgl.la)
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making all in SYMPHONY
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master.lo `test -f 'Master/master.c' || echo './'`Master/master.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master.c  -fPIC -DPIC -o libSym_la-master.o
Master/master.c: In function 'int sym_get_row_upper(sym_environment*, double*)':
Master/master.c:3129:11: warning: variable 'lower' set but not used [-Wunused-but-set-variable]
    double lower;
           ^
Master/master.c: In function 'int sym_set_col_solution(sym_environment*, double*)':
Master/master.c:3921:11: warning: variable 'value' set but not used [-Wunused-but-set-variable]
    double value, *rowAct = NULL, *matVal; 
           ^
Master/master.c: In function 'int sym_delete_rows(sym_environment*, int, int*)':
Master/master.c:4713:23: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
    int i, j, k, n, m, nz, new_num_elements = 0, new_num_rows = 0;
                       ^
Master/master.c: In function 'void sym_delete_warm_start(warm_start_desc*)':
Master/master.c:5042:11: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
    int i, temp;
           ^
Master/master.c: In function 'warm_start_desc* sym_read_warm_start(char*)':
Master/master.c:4947:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %s %s", str, str, str, str);
                                                  ^
Master/master.c:4948:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &ws->phase);
                                                 ^
Master/master.c:4949:47: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &ws->lb);
                                               ^
Master/master.c:4950:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &ch);
                                          ^
Master/master.c:4952:47: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &ws->ub);
                                               ^
Master/master.c:4955:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %s %s", str, str, str, str);
                                                  ^
Master/master.c:4956:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &ws->cut_num);
                                                   ^
Master/master.c:4957:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &temp);
                                            ^
Master/master.c:4964:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %i %s", str, &num, str);
                                          ^
Master/master.c:4965:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %i", str, str, &cut->size);
                                                ^
Master/master.c:4967:33: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s", str, str);
                                 ^
Master/master.c:4970:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(f,"%i", &ch);
                            ^
Master/master.c:4973:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %lf", str, str, &cut->rhs);
                                                ^
Master/master.c:4974:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %lf", str, str, &cut->range);
                                                  ^
Master/master.c:4975:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %i", str, str, &ch);
                                         ^
Master/master.c:4977:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %c", str, str, &cut->sense);
                                                 ^
Master/master.c:4978:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %i", str, str, &ch);
                                         ^
Master/master.c:4980:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %i", str, str, &ch);
                                         ^
Master/master.c:4982:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f,"%s %s %i", str, str, &cut->name);
                                                ^
Master/master.c:4989:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %s %s", str, str, str, str);
                                                  ^
Master/master.c:4990:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &stat.root_lb);
                                                     ^
Master/master.c:4991:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.cuts_in_pool);
                                                         ^
Master/master.c:4992:54: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.max_depth);
                                                      ^
Master/master.c:4993:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.chains);
                                                   ^
Master/master.c:4994:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.diving_halts);
                                                         ^
Master/master.c:4995:54: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.tree_size);
                                                      ^
Master/master.c:4996:52: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.created);
                                                    ^
Master/master.c:4997:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.analyzed);
                                                     ^
Master/master.c:4998:67: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.leaves_before_trimming);
                                                                   ^
Master/master.c:4999:66: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.leaves_after_trimming);
                                                                  ^
Master/master.c:5000:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &stat.vars_not_priced);
                                                            ^
Master/master.c:5001:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %i", str, str, &ch);
                                          ^
Master/master.c:5007:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %s %s", str, str, str, str);
                                                  ^
Master/master.c:5008:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.communication);
                                                            ^
Master/master.c:5009:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.lp);
                                                 ^
Master/master.c:5010:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.separation);
                                                         ^
Master/master.c:5011:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.fixing);
                                                     ^
Master/master.c:5012:54: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.pricing);
                                                      ^
Master/master.c:5013:63: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.strong_branching);
                                                               ^
Master/master.c:5014:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.wall_clock_lp);
                                                            ^
Master/master.c:5015:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.ramp_up_tm);
                                                         ^
Master/master.c:5016:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.ramp_up_lp);
                                                         ^
Master/master.c:5017:61: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.ramp_down_time);
                                                             ^
Master/master.c:5018:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.idle_diving);
                                                          ^
Master/master.c:5019:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.idle_node);
                                                        ^
Master/master.c:5020:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.idle_names);
                                                         ^
Master/master.c:5021:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.idle_cuts);
                                                        ^
Master/master.c:5022:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.start_node);
                                                         ^
Master/master.c:5023:55: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %lf", str, str, &compT.cut_pool);
                                                       ^
Master/master.c:5028:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f,"%s %s %s %s", str, str, str, str);
                                                  ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_wrapper.lo `test -f 'Master/master_wrapper.c' || echo './'`Master/master_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_wrapper.c  -fPIC -DPIC -o libSym_la-master_wrapper.o
Master/master_wrapper.c: In function 'int free_master_u(sym_environment*)':
Master/master_wrapper.c:787:22: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
    if (tmp = env->mip){
                      ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_io.lo `test -f 'Master/master_io.c' || echo './'`Master/master_io.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_io.c  -fPIC -DPIC -o libSym_la-master_io.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_func.lo `test -f 'Master/master_func.c' || echo './'`Master/master_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_func.c  -fPIC -DPIC -o libSym_la-master_func.o
Master/master_func.c: In function 'int read_node(bc_node*, FILE*)':
Master/master_func.c:1606:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->bc_index);
                                                   ^
Master/master_func.c:1607:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->bc_level);
                                                   ^
Master/master_func.c:1608:55: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %lf", str, str, &node->lower_bound);
                                                       ^
Master/master_func.c:1609:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &ch);
                                       ^
Master/master_func.c:1611:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->lp);
                                             ^
Master/master_func.c:1612:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->cg);
                                             ^
Master/master_func.c:1613:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->cp);
                                             ^
Master/master_func.c:1614:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %lf", str, str, &node->opt_estimate);
                                                        ^
Master/master_func.c:1619:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &num);
                                        ^
Master/master_func.c:1621:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    &node->bobj.child_num);
                          ^
Master/master_func.c:1633:25: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   &node->bobj.branch[i]);
                         ^
Master/master_func.c:1637:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->desc.nf_status);
                                                         ^
Master/master_func.c:1639:27: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    &node->desc.uind.added);
                           ^
Master/master_func.c:1645:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i", &node->desc.uind.list[i]);
                                            ^
Master/master_func.c:1650:32: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    &node->desc.not_fixed.added);
                                ^
Master/master_func.c:1657:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i", &node->desc.not_fixed.list[i]);
                                                 ^
Master/master_func.c:1662:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    &node->desc.cutind.added);      
                             ^
Master/master_func.c:1667:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i", &node->desc.cutind.list[i]);
                                              ^
Master/master_func.c:1670:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &ch);
                                       ^
Master/master_func.c:1672:75: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i %i", str, str, &ch, &node->desc.basis.basevars.size);
                                                                           ^
Master/master_func.c:1682:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         &node->desc.basis.basevars.stat[i]);
                                            ^
Master/master_func.c:1687:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", &node->desc.basis.basevars.stat[i]);
                                                         ^
Master/master_func.c:1691:76: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i %i", str, str, &ch, &node->desc.basis.extravars.size);
                                                                            ^
Master/master_func.c:1701:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      &node->desc.basis.extravars.stat[i]);
                                          ^
Master/master_func.c:1705:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", &node->desc.basis.extravars.stat[i]);
                                                          ^
Master/master_func.c:1709:75: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i %i", str, str, &ch, &node->desc.basis.baserows.size);   
                                                                           ^
Master/master_func.c:1719:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      &node->desc.basis.baserows.stat[i]);
                                         ^
Master/master_func.c:1722:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", &node->desc.basis.baserows.stat[i]);
                                                         ^
Master/master_func.c:1726:76: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i %i", str, str, &ch, &node->desc.basis.extrarows.size);   
                                                                            ^
Master/master_func.c:1736:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      &node->desc.basis.extrarows.stat[i]);
                                          ^
Master/master_func.c:1739:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", &node->desc.basis.extrarows.stat[i]);
                                                          ^
Master/master_func.c:1743:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f,"%s %s %i", str, str, &node->desc.desc_size);
                                                         ^
Master/master_func.c:1748:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i", &ch);
                       ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep.lo `test -f 'Master/master_prep.c' || echo './'`Master/master_prep.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep.c  -fPIC -DPIC -o libSym_la-master_prep.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep_base.lo `test -f 'Master/master_prep_base.c' || echo './'`Master/master_prep_base.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep_base.c  -fPIC -DPIC -o libSym_la-master_prep_base.o
Master/master_prep_base.c: In function 'int prep_basic(PREPdesc*)':
Master/master_prep_base.c:54:25: warning: variable 'r_matbeg' set but not used [-Wunused-but-set-variable]
    int i, j, m, n, nz, *r_matbeg, *r_matind, *matbeg, *matind; 
                         ^
Master/master_prep_base.c:54:36: warning: variable 'r_matind' set but not used [-Wunused-but-set-variable]
    int i, j, m, n, nz, *r_matbeg, *r_matind, *matbeg, *matind; 
                                    ^
Master/master_prep_base.c:55:12: warning: variable 'obj' set but not used [-Wunused-but-set-variable]
    double *obj, *rhs, *r_matval, *matval, *ub, *lb;
            ^
Master/master_prep_base.c:55:24: warning: variable 'r_matval' set but not used [-Wunused-but-set-variable]
    double *obj, *rhs, *r_matval, *matval, *ub, *lb;
                        ^
Master/master_prep_base.c: In function 'int prep_cleanup_desc(PREPdesc*)':
Master/master_prep_base.c:4963:27: warning: variable 'o_sense' set but not used [-Wunused-but-set-variable]
    char *is_int, *sense, *o_sense, **colnames;
                           ^
Master/master_prep_base.c: In function 'void prep_sos_fill_row(ROWinfo*, int, int, int*)':
Master/master_prep_base.c:5577:35: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
       (row->sos_rep[ind[i] >> 3]) |= (1 << (ind[i] & 7));
                                   ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-master_prep_sr.lo `test -f 'Master/master_prep_sr.c' || echo './'`Master/master_prep_sr.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Master/master_prep_sr.c  -fPIC -DPIC -o libSym_la-master_prep_sr.o
Master/master_prep_sr.c: In function 'int prep_solve_sr_rlx(PREPdesc*, int, int*)':
Master/master_prep_sr.c:128:8: warning: variable 'p_level' set but not used [-Wunused-but-set-variable]
    int p_level, do_sr_rlx, do_aggr_row_rlx;  
        ^
Master/master_prep_sr.c:128:17: warning: variable 'do_sr_rlx' set but not used [-Wunused-but-set-variable]
    int p_level, do_sr_rlx, do_aggr_row_rlx;  
                 ^
Master/master_prep_sr.c:128:28: warning: variable 'do_aggr_row_rlx' set but not used [-Wunused-but-set-variable]
    int p_level, do_sr_rlx, do_aggr_row_rlx;  
                            ^
Master/master_prep_sr.c:130:9: warning: variable 'can_iterate' set but not used [-Wunused-but-set-variable]
    char can_iterate = TRUE;
         ^
Master/master_prep_sr.c: In function 'int sr_find_opt_bounded(PREPdesc*, SRdesc*, int, double*, double*)':
Master/master_prep_sr.c:523:11: warning: variable 'last_ind' set but not used [-Wunused-but-set-variable]
    int i, last_ind, col_loc, col_ind, *var_stat; //,j, var_ind;
           ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-tm_func.lo `test -f 'TreeManager/tm_func.c' || echo './'`TreeManager/tm_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c TreeManager/tm_func.c  -fPIC -DPIC -o libSym_la-tm_func.o
TreeManager/tm_func.c: In function 'void print_tree_status(tm_prob*)':
TreeManager/tm_func.c:746:8: warning: unused variable 'thread_num' [-Wunused-variable]
    int thread_num = omp_get_thread_num();
        ^
TreeManager/tm_func.c: In function 'int node_compar(tm_prob*, int, bc_node*, bc_node*)':
TreeManager/tm_func.c:1176:8: warning: variable 'n0_ind' set but not used [-Wunused-but-set-variable]
    int n0_ind, n1_ind;
        ^
TreeManager/tm_func.c:1176:16: warning: variable 'n1_ind' set but not used [-Wunused-but-set-variable]
    int n0_ind, n1_ind;
                ^
TreeManager/tm_func.c:1179:11: warning: variable 'n0_frac' set but not used [-Wunused-but-set-variable]
    double n0_frac, n1_frac; 
           ^
TreeManager/tm_func.c:1179:20: warning: variable 'n1_frac' set but not used [-Wunused-but-set-variable]
    double n0_frac, n1_frac; 
                    ^
TreeManager/tm_func.c: In function 'int read_node(tm_prob*, bc_node*, FILE*, int**)':
TreeManager/tm_func.c:3170:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %i", str1, str2, &node->bc_index);
                                                         ^
TreeManager/tm_func.c:3171:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %i", str1, str2, &node->bc_level);
                                                         ^
TreeManager/tm_func.c:3172:61: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %lf", str1, str2, &node->lower_bound);
                                                             ^
TreeManager/tm_func.c:3173:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %i", str1, str2, &tmp);
                                              ^
TreeManager/tm_func.c:3179:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %i", str1, str2, &parent);
                                                 ^
TreeManager/tm_func.c:3181:47: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->bobj.name, &node->bobj.child_num);
                                               ^
TreeManager/tm_func.c:3193:64: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      node->bobj.rhs+i, node->bobj.range+i, node->bobj.branch+i);
                                                                ^
TreeManager/tm_func.c:3195:63: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %s %i", str1, str2, &node->desc.nf_status);
                                                               ^
TreeManager/tm_func.c:3197:30: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.uind.added);
                              ^
TreeManager/tm_func.c:3202:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", node->desc.uind.list+i);
                                             ^
TreeManager/tm_func.c:3205:63: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.not_fixed.size, &node->desc.not_fixed.added);
                                                               ^
TreeManager/tm_func.c:3211:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", node->desc.not_fixed.list+i);
                                                  ^
TreeManager/tm_func.c:3214:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.cutind.size, &node->desc.cutind.added);
                                                         ^
TreeManager/tm_func.c:3219:47: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
      fscanf(f, "%i", node->desc.cutind.list+i);
                                               ^
TreeManager/tm_func.c:3221:37: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%s %i", str1, &tmp);
                                     ^
TreeManager/tm_func.c:3224:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.basis.basevars.size);
                                       ^
TreeManager/tm_func.c:3234:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         node->desc.basis.basevars.stat+i);
                                          ^
TreeManager/tm_func.c:3237:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(f, "%i", node->desc.basis.basevars.stat+i);
                                                          ^
TreeManager/tm_func.c:3241:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.basis.extravars.size);
                                        ^
TreeManager/tm_func.c:3251:43: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         node->desc.basis.extravars.stat+i);
                                           ^
TreeManager/tm_func.c:3254:59: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(f, "%i", node->desc.basis.extravars.stat+i);
                                                           ^
TreeManager/tm_func.c:3258:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.basis.baserows.size);
                                       ^
TreeManager/tm_func.c:3268:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         node->desc.basis.baserows.stat+i);
                                          ^
TreeManager/tm_func.c:3271:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(f, "%i", node->desc.basis.baserows.stat+i);
                                                          ^
TreeManager/tm_func.c:3275:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &node->desc.basis.extrarows.size);
                                        ^
TreeManager/tm_func.c:3285:43: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         node->desc.basis.extrarows.stat+i);
                                           ^
TreeManager/tm_func.c:3288:59: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(f, "%i", node->desc.basis.extrarows.stat+i);
                                                           ^
TreeManager/tm_func.c: In function 'int read_tm_cut_list(tm_prob*, char*)':
TreeManager/tm_func.c:3413:68: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %i %i", str, &tm->cut_num, &tm->allocated_cut_num);
                                                                    ^
TreeManager/tm_func.c:3419:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &tmp2, &tm->cuts[i]->rhs, &tm->cuts[i]->range);
                                                     ^
TreeManager/tm_func.c:3424:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i ", &tmp1);
                          ^
TreeManager/tm_func.c: In function 'int read_tm_info(tm_prob*, FILE*)':
TreeManager/tm_func.c:3504:34: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s", str1, str2);
                                  ^
TreeManager/tm_func.c:3507:47: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %lf", str1, str2, &tm->lb);
                                               ^
TreeManager/tm_func.c:3508:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %i", str1, &tm->phase);
                                        ^
TreeManager/tm_func.c:3509:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %lf", str1, str2, &tm->stat.root_lb);
                                                         ^
TreeManager/tm_func.c:3510:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.max_depth);
                                                          ^
TreeManager/tm_func.c:3511:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %i", str1, &tm->stat.chains);
                                              ^
TreeManager/tm_func.c:3512:61: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.diving_halts);
                                                             ^
TreeManager/tm_func.c:3513:58: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.tree_size);
                                                          ^
TreeManager/tm_func.c:3514:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.created);
                                                        ^
TreeManager/tm_func.c:3515:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.analyzed);
                                                         ^
TreeManager/tm_func.c:3516:71: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.leaves_before_trimming);
                                                                       ^
TreeManager/tm_func.c:3517:70: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tm->stat.leaves_after_trimming);
                                                                      ^
TreeManager/tm_func.c:3518:43: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i", str1, str2, &tmp);
                                           ^
TreeManager/tm_func.c:3520:25: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s", str1);
                         ^
TreeManager/tm_func.c:3521:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.communication);
                                                            ^
TreeManager/tm_func.c:3522:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.lp);
                                                 ^
TreeManager/tm_func.c:3523:57: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.separation);
                                                         ^
TreeManager/tm_func.c:3524:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.fixing);
                                                     ^
TreeManager/tm_func.c:3525:54: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.pricing);
                                                      ^
TreeManager/tm_func.c:3526:63: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %lf", str1, &tm->comp_times.strong_branching);
                                                               ^
TreeManager/tm_func.c:3527:64: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %lf", str1, str2, &tm->comp_times.cut_pool);
                                                                ^
TreeManager/tm_func.c:3528:64: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %lf\n", str1, str2, &previous_elapsed_time);
                                                                ^
TreeManager/tm_func.c: In function 'int read_base(base_desc*, FILE*)':
TreeManager/tm_func.c:3566:70: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %s %i %i", str1, str2, &base->varnum, &base->cutnum);
                                                                      ^
TreeManager/tm_func.c:3569:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf(f, "%i", base->userind+i);
                                       ^
TreeManager/tm_func.c: In function 'void sym_catch_c(int)':
TreeManager/tm_func.c:3896:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets(temp, MAX_LINE_LENGTH, stdin);
                                       ^
TreeManager/tm_func.c: In function 'int solve(tm_prob*)':
TreeManager/tm_func.c:594:13: warning: 'now' may be used uninitialized in this function [-Wmaybe-uninitialized]
     if (now - then2 > timeout2){
             ^
TreeManager/tm_func.c:594:13: warning: 'then2' may be used uninitialized in this function [-Wmaybe-uninitialized]
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-tm_proccomm.lo `test -f 'TreeManager/tm_proccomm.c' || echo './'`TreeManager/tm_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c TreeManager/tm_proccomm.c  -fPIC -DPIC -o libSym_la-tm_proccomm.o
TreeManager/tm_proccomm.c: In function 'process_set start_processes(tm_prob*, int, char*, int, int, char**)':
TreeManager/tm_proccomm.c:55:8: warning: variable 's_bufid' set but not used [-Wunused-but-set-variable]
    int s_bufid, i;
        ^
TreeManager/tm_proccomm.c: In function 'void stop_processes(process_set*)':
TreeManager/tm_proccomm.c:94:11: warning: variable 's_bufid' set but not used [-Wunused-but-set-variable]
       int s_bufid;
           ^
TreeManager/tm_proccomm.c: In function 'void send_active_node(tm_prob*, bc_node*, int, int)':
TreeManager/tm_proccomm.c:401:10: warning: unused variable 'frac_var_cnt' [-Wunused-variable]
    int * frac_var_cnt = lp[thread_num]->frac_var_cnt;
          ^
TreeManager/tm_proccomm.c: In function 'void process_branching_info(tm_prob*, bc_node*)':
TreeManager/tm_proccomm.c:908:8: warning: variable 's_bufid' set but not used [-Wunused-but-set-variable]
    int s_bufid;
        ^
TreeManager/tm_proccomm.c: In function 'void unpack_cut_set(tm_prob*, int, int, row_data*)':
TreeManager/tm_proccomm.c:1124:56: warning: unused variable 'itmp' [-Wunused-variable]
    int old_cutnum = tm->cut_num, new_cutnum = cutnum, *itmp, i;
                                                        ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_solver.lo `test -f 'LP/lp_solver.c' || echo './'`LP/lp_solver.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_solver.c  -fPIC -DPIC -o libSym_la-lp_solver.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_varfunc.lo `test -f 'LP/lp_varfunc.c' || echo './'`LP/lp_varfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_varfunc.c  -fPIC -DPIC -o libSym_la-lp_varfunc.o
LP/lp_varfunc.c: In function 'void add_col_set(lp_prob*, our_col_set*)':
LP/lp_varfunc.c:81:25: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
   status[j] = NOT_FIXED | (status[j] & NOT_REMOVABLE);
                         ^
LP/lp_varfunc.c:92:25: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
   status[j] = NOT_FIXED | (status[j] & NOT_REMOVABLE);
                         ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_rowfunc.lo `test -f 'LP/lp_rowfunc.c' || echo './'`LP/lp_rowfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_rowfunc.c  -fPIC -DPIC -o libSym_la-lp_rowfunc.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_genfunc.lo `test -f 'LP/lp_genfunc.c' || echo './'`LP/lp_genfunc.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_genfunc.c  -fPIC -DPIC -o libSym_la-lp_genfunc.o
LP/lp_genfunc.c: In function 'int check_and_add_cgl_cuts(lp_prob*, int, cut_data***, int*, int*, OsiCuts*, int)':
LP/lp_genfunc.c:3015:11: warning: variable 'is_int' set but not used [-Wunused-but-set-variable]
       int is_int = TRUE; 
           ^
LP/lp_genfunc.c:2933:17: warning: variable 'discard_cut' set but not used [-Wunused-but-set-variable]
       *indices, discard_cut, num_poor_quality = 0, num_unviolated = 0,
                 ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_proccomm.lo `test -f 'LP/lp_proccomm.c' || echo './'`LP/lp_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_proccomm.c  -fPIC -DPIC -o libSym_la-lp_proccomm.o
LP/lp_proccomm.c: In function 'int process_message(lp_prob*, int, int*, int*)':
LP/lp_proccomm.c:72:8: warning: variable 's_bufid' set but not used [-Wunused-but-set-variable]
    int s_bufid, bytes, msgtag, sender;
        ^
LP/lp_proccomm.c: In function 'int receive_active_node(lp_prob*)':
LP/lp_proccomm.c:207:11: warning: variable 's_bufid' set but not used [-Wunused-but-set-variable]
    int i, s_bufid;
           ^
LP/lp_proccomm.c: In function 'void send_node_desc(lp_prob*, int)':
LP/lp_proccomm.c:555:18: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    n->cuts_tried = p->lp_stat.node_cuts_tried;
                  ^
LP/lp_proccomm.c:556:19: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    n->cuts_forced = p->lp_stat.node_cuts_forced; 
                   ^
LP/lp_proccomm.c: In function 'char pack_extra_diff(array_desc*, int*, array_desc*, int*, char, char, int*, int*)':
LP/lp_proccomm.c:1339:19: warning: variable 'k' set but not used [-Wunused-but-set-variable]
    int tmp, i, j, k, l;
                   ^
LP/lp_proccomm.c: In function 'void send_branching_info(lp_prob*, branch_obj*, char*, int*)':
LP/lp_proccomm.c:1435:19: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    char dive = p->dive, olddive = p->dive;
                   ^
LP/lp_proccomm.c:1435:38: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
    char dive = p->dive, olddive = p->dive;
                                      ^
LP/lp_proccomm.c:1475:29: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
        action, dive, keep, i);
                             ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_wrapper.lo `test -f 'LP/lp_wrapper.c' || echo './'`LP/lp_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_wrapper.c  -fPIC -DPIC -o libSym_la-lp_wrapper.o
LP/lp_wrapper.c: In function 'int receive_lp_data_u(lp_prob*)':
LP/lp_wrapper.c:60:8: warning: variable 'r_bufid' set but not used [-Wunused-but-set-variable]
    int r_bufid;
        ^
LP/lp_wrapper.c: In function 'void logical_fixing_u(lp_prob*)':
LP/lp_wrapper.c:2400:18: warning: conversion to 'char' from 'int' may alter its value [-Wconversion]
      *lpstatus++ |= (*status++ & (NOT_FIXED |
                  ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_free.lo `test -f 'LP/lp_free.c' || echo './'`LP/lp_free.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_free.c  -fPIC -DPIC -o libSym_la-lp_free.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_sp.lo `test -f 'LP/lp_sp.c' || echo './'`LP/lp_sp.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_sp.c  -fPIC -DPIC -o libSym_la-lp_sp.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_heuristics.lo `test -f 'LP/lp_heuristics.c' || echo './'`LP/lp_heuristics.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_heuristics.c  -fPIC -DPIC -o libSym_la-lp_heuristics.o
In file included from LP/lp_heuristics.c:27:0:
LP/lp_heuristics.c: In function 'int feasibility_pump(lp_prob*, char*, double&, double*, double*)':
../include/sym_macros.h:190:40: warning: conversion to 'int' from 'double' may alter its value [-Wconversion]
 #define MAX(a,b) ((a) > (b) ? (a) : (b))
                                        ^
LP/lp_heuristics.c:93:22: note: in expansion of macro 'MAX'
      int reg_limit = MAX(1e4, (int)(((int)(1.0*NUM_NODES/100) + 1)*1e8/lp_data->nz));
                      ^
LP/lp_heuristics.c:64:41: warning: variable 'cnt' set but not used [-Wunused-but-set-variable]
    int                      i, r, iter, cnt, verbosity;
                                         ^
LP/lp_heuristics.c:68:29: warning: variable 'vars' set but not used [-Wunused-but-set-variable]
    FPvars                 **vars;
                             ^
LP/lp_heuristics.c:74:36: warning: variable 'x_lp' set but not used [-Wunused-but-set-variable]
    double                  *x_ip, *x_lp, new_solution_value;
                                    ^
LP/lp_heuristics.c: In function 'int fp_solve_lp(LPdata*, FPdata*, char*)':
LP/lp_heuristics.c:676:11: warning: variable 'delta_x' set but not used [-Wunused-but-set-variable]
    double delta_x;
           ^
LP/lp_heuristics.c: In function 'int diving_search(lp_prob*, double*, double*, double*, char, double)':
LP/lp_heuristics.c:1142:15: warning: conversion to 'int' from 'double' may alter its value [-Wconversion]
     reg_limit = MAX(1e4, (int)(((int)(1.0*NUM_NODES/100) + 1)*1e8/lp_data->nz));
               ^
LP/lp_heuristics.c:1144:15: warning: conversion to 'int' from 'double' may alter its value [-Wconversion]
     reg_limit = MAX(1e4, (int)(0.5e9/lp_data->nz));
               ^
LP/lp_heuristics.c:1309:7: warning: variable 'no_impr_cnt_limit' set but not used [-Wunused-but-set-variable]
   int no_impr_cnt_limit = 10; //ds_no_impr_cnt_limit
       ^
LP/lp_heuristics.c: In function 'int fr_force_feasible(lp_prob*, char, int*, int*, char*, double*, int*, int*)':
LP/lp_heuristics.c:4830:18: warning: variable 'r_matval' set but not used [-Wunused-but-set-variable]
    const double *r_matval;
                  ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-lp_branch.lo `test -f 'LP/lp_branch.c' || echo './'`LP/lp_branch.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c LP/lp_branch.c  -fPIC -DPIC -o libSym_la-lp_branch.o
LP/lp_branch.c: In function 'int select_branching_object(lp_prob*, int*, branch_obj**)':
LP/lp_branch.c:373:10: warning: variable 'get_cols_dir' set but not used [-Wunused-but-set-variable]
     char get_cols_dir = 'R';
          ^
LP/lp_branch.c:360:13: warning: variable 'up_max' set but not used [-Wunused-but-set-variable]
      double up_max, down_max, new_act, new_row_lb, new_row_ub; 
             ^
LP/lp_branch.c:360:21: warning: variable 'down_max' set but not used [-Wunused-but-set-variable]
      double up_max, down_max, new_act, new_row_lb, new_row_ub; 
                     ^
LP/lp_branch.c:121:8: warning: variable 'm' set but not used [-Wunused-but-set-variable]
    int m;
        ^
LP/lp_branch.c:1387:30: warning: 'best_up_is_est' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if((best_down_is_est && best_up_is_est) ||
                              ^
LP/lp_branch.c:1387:30: warning: 'best_down_is_est' may be used uninitialized in this function [-Wmaybe-uninitialized]
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cg_func.lo `test -f 'CutGen/cg_func.c' || echo './'`CutGen/cg_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutGen/cg_func.c  -fPIC -DPIC -o libSym_la-cg_func.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cg_wrapper.lo `test -f 'CutGen/cg_wrapper.c' || echo './'`CutGen/cg_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutGen/cg_wrapper.c  -fPIC -DPIC -o libSym_la-cg_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_proccomm.lo `test -f 'CutPool/cp_proccomm.c' || echo './'`CutPool/cp_proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_proccomm.c  -fPIC -DPIC -o libSym_la-cp_proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_func.lo `test -f 'CutPool/cp_func.c' || echo './'`CutPool/cp_func.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_func.c  -fPIC -DPIC -o libSym_la-cp_func.o
CutPool/cp_func.c: In function 'int read_cp_cut_list(cut_pool*, char*)':
CutPool/cp_func.c:337:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    &cp->size);
              ^
CutPool/cp_func.c:345:54: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &cp->cuts[i]->cut.rhs, &cp->cuts[i]->cut.range);
                                                      ^
CutPool/cp_func.c:351:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i ", &tmp1);
                          ^
CutPool/cp_func.c: In function 'int cp_read_tm_cut_list(cut_pool*, char*)':
CutPool/cp_func.c:375:68: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf(f, "%s %i %i", str, &cp->cut_num, &cp->allocated_cut_num);
                                                                    ^
CutPool/cp_func.c:382:61: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       &tmp2, &cp->cuts[i]->cut.rhs, &cp->cuts[i]->cut.range);
                                                             ^
CutPool/cp_func.c:389:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(f, "%i ", &tmp1);
                          ^
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-cp_wrapper.lo `test -f 'CutPool/cp_wrapper.c' || echo './'`CutPool/cp_wrapper.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c CutPool/cp_wrapper.c  -fPIC -DPIC -o libSym_la-cp_wrapper.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-timemeas.lo `test -f 'Common/timemeas.c' || echo './'`Common/timemeas.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/timemeas.c  -fPIC -DPIC -o libSym_la-timemeas.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-sym_qsort.lo `test -f 'Common/sym_qsort.c' || echo './'`Common/sym_qsort.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/sym_qsort.c  -fPIC -DPIC -o libSym_la-sym_qsort.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-proccomm.lo `test -f 'Common/proccomm.c' || echo './'`Common/proccomm.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/proccomm.c  -fPIC -DPIC -o libSym_la-proccomm.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-pack_cut.lo `test -f 'Common/pack_cut.c' || echo './'`Common/pack_cut.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/pack_cut.c  -fPIC -DPIC -o libSym_la-pack_cut.o
/bin/bash ../../libtool --tag=CC --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o libSym_la-pack_array.lo `test -f 'Common/pack_array.c' || echo './'`Common/pack_array.c
 g++ -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c Common/pack_array.c  -fPIC -DPIC -o libSym_la-pack_array.o
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o libSym.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib  -no-undefined -version-info 9:10:6  libSym_la-master.lo libSym_la-master_wrapper.lo libSym_la-master_io.lo libSym_la-master_func.lo libSym_la-master_prep.lo libSym_la-master_prep_base.lo libSym_la-master_prep_sr.lo libSym_la-tm_func.lo libSym_la-tm_proccomm.lo libSym_la-lp_solver.lo libSym_la-lp_varfunc.lo libSym_la-lp_rowfunc.lo libSym_la-lp_genfunc.lo libSym_la-lp_proccomm.lo libSym_la-lp_wrapper.lo libSym_la-lp_free.lo libSym_la-lp_sp.lo libSym_la-lp_heuristics.lo  libSym_la-lp_branch.lo libSym_la-cg_func.lo libSym_la-cg_wrapper.lo libSym_la-cp_proccomm.lo libSym_la-cp_func.lo libSym_la-cp_wrapper.lo libSym_la-timemeas.lo libSym_la-sym_qsort.lo libSym_la-proccomm.lo libSym_la-pack_cut.lo libSym_la-pack_array.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    -lgomp 
mkdir .libs
ar cru .libs/libSym.a  libSym_la-master.o libSym_la-master_wrapper.o libSym_la-master_io.o libSym_la-master_func.o libSym_la-master_prep.o libSym_la-master_prep_base.o libSym_la-master_prep_sr.o libSym_la-tm_func.o libSym_la-tm_proccomm.o libSym_la-lp_solver.o libSym_la-lp_varfunc.o libSym_la-lp_rowfunc.o libSym_la-lp_genfunc.o libSym_la-lp_proccomm.o libSym_la-lp_wrapper.o libSym_la-lp_free.o libSym_la-lp_sp.o libSym_la-lp_heuristics.o libSym_la-lp_branch.o libSym_la-cg_func.o libSym_la-cg_wrapper.o libSym_la-cp_proccomm.o libSym_la-cp_func.o libSym_la-cp_wrapper.o libSym_la-timemeas.o libSym_la-sym_qsort.o libSym_la-proccomm.o libSym_la-pack_cut.o libSym_la-pack_array.o
ranlib .libs/libSym.a
creating libSym.la
(cd .libs && rm -f libSym.la && ln -s ../libSym.la libSym.la)
g++ -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src   -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src    -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__LINUX -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM   -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o symphony-main.o `test -f 'Master/main.c' || echo './'`Master/main.c
Master/main.c: In function ‘int sym_read_line(const char*, char**)’:
Master/main.c:738:41: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
      fgets(getl, MAX_LINE_LENGTH, stdin);
                                         ^
/bin/bash ../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o symphony -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib  symphony-main.o libSym.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm     
g++ -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -o symphony symphony-main.o  ./.libs/libSym.a -lgomp /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/.libs/libCgl.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/.libs/libOsiClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClpSolver.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/.libs/libOsi.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -llapack -lblas -lm -Wl,--rpath -Wl,/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making all in src/OsiSym
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o OsiSymSolverInterface.lo OsiSymSolverInterface.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c OsiSymSolverInterface.cpp  -fPIC -DPIC -o OsiSymSolverInterface.o
/bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src     -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c -o SymWarmStart.lo SymWarmStart.cpp
 g++ -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual -c SymWarmStart.cpp  -fPIC -DPIC -o SymWarmStart.o
/bin/bash ../../../libtool --tag=CXX --mode=link g++  -O3 -pipe -DNDEBUG -pedantic-errors -Wparentheses -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings -Wconversion -Wno-unknown-pragmas -Wno-long-long   -DSYMPHONY_BUILD -fopenmp -Wno-unknown-pragmas -Wno-write-strings -Wno-sign-compare -Wno-cast-qual   -o libOsiSym.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 9:10:6 OsiSymSolverInterface.lo SymWarmStart.lo /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -llapack -lblas -lm    ../libSym.la 
mkdir .libs
ar cru .libs/libOsiSym.a  OsiSymSolverInterface.o SymWarmStart.o
ranlib .libs/libOsiSym.a
creating libOsiSym.la
(cd .libs && rm -f libOsiSym.la && ln -s ../libOsiSym.la libOsiSym.la)
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
Making install in CoinUtils
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	"pkg-config" --libs coinutils > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in Osi
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making install in src/Osi
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
Making install in src/OsiCommonTest
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs osi > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making install in Clp
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'clp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[5]: Nothing to be done for `install-exec-hook'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
Making install in src/OsiClp
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs clp > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making install in Cgl
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
Making install in CglAllDifferent
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
Making install in CglClique
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
Making install in CglDuplicateRow
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
Making install in CglFlowCover
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
Making install in CglGMI
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
Making install in CglGomory
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
Making install in CglKnapsackCover
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
Making install in CglLandP
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
Making install in CglLiftAndProject
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
Making install in CglMixedIntegerRounding
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
Making install in CglMixedIntegerRounding2
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
Making install in CglOddHole
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
Making install in CglPreProcess
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
Making install in CglProbing
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
Making install in CglRedSplit
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
Making install in CglRedSplit2
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
Making install in CglResidualCapacity
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
Making install in CglSimpleRounding
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
Making install in CglTwomir
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
Making install in CglZeroHalf
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs cgl > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making install in SYMPHONY
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'symphony' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[5]: Nothing to be done for `install-exec-hook'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making install in src/OsiSym
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs symphony > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
touch SYMPHONY.ts
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -ISYMPHONY/include -I/usr/local/include    -fpic  -g -O2  -Wall -c lp_symphony.cc -o lp_symphony.o
g++ -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o lpsymphony.so lp_symphony.o -LSYMPHONY/lib -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -L/home/biocbuild/bbs-3.3-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.3-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
Making all in CoinUtils
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make  all-am
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making all in Osi
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making all in src/Osi
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make  all-am
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
Making all in src/OsiCommonTest
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making all in Clp
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make  all-am
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
Making all in src/OsiClp
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making all in Cgl
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make  all-recursive
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
Making all in CglAllDifferent
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
Making all in CglClique
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
Making all in CglDuplicateRow
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
Making all in CglFlowCover
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
Making all in CglGMI
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
Making all in CglGomory
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
Making all in CglKnapsackCover
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
Making all in CglLandP
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
Making all in CglLiftAndProject
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
Making all in CglMixedIntegerRounding
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
Making all in CglMixedIntegerRounding2
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
Making all in CglOddHole
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
Making all in CglPreProcess
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
Making all in CglProbing
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
Making all in CglRedSplit
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
Making all in CglRedSplit2
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
Making all in CglResidualCapacity
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
Making all in CglSimpleRounding
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
Making all in CglTwomir
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
Making all in CglZeroHalf
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making all in SYMPHONY
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
Making all in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making all in src/OsiSym
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
Making install in CoinUtils
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	"pkg-config" --libs coinutils > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/CoinUtils'
Making install in Osi
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making install in src/Osi
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsi.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/Osi'
Making install in src/OsiCommonTest
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi/src/OsiCommonTest'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs osi > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Osi'
Making install in Clp
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'clp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/clp
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[5]: Nothing to be done for `install-exec-hook'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src'
Making install in src/OsiClp
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp/src/OsiClp'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs clp > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Clp'
Making install in Cgl
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
Making install in CglAllDifferent
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent'
Making install in CglClique
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglClique'
Making install in CglDuplicateRow
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow'
Making install in CglFlowCover
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover'
Making install in CglGMI
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI'
Making install in CglGomory
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory'
Making install in CglKnapsackCover
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover'
Making install in CglLandP
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP'
Making install in CglLiftAndProject
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject'
Making install in CglMixedIntegerRounding
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding'
Making install in CglMixedIntegerRounding2
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2'
Making install in CglOddHole
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole'
Making install in CglPreProcess
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess'
Making install in CglProbing
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing'
Making install in CglRedSplit
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit'
Making install in CglRedSplit2
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2'
Making install in CglResidualCapacity
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity'
Making install in CglSimpleRounding
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding'
Making install in CglTwomir
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir'
Making install in CglZeroHalf
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[5]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libCgl.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl/src'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs cgl > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/Cgl'
Making install in SYMPHONY
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
Making install in src
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin"
  /bin/bash ../../libtool --mode=install /usr/bin/install -c 'symphony' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/bin/symphony
/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[5]: Nothing to be done for `install-exec-hook'.
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src'
Making install in src/OsiSym
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib"
 /bin/bash ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
PATH="$PATH:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY/src/OsiSym'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
	done 
test -z "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig" || mkdir -p -- "/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
make[5]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
PKG_CONFIG_PATH=/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/pkgconfig:/usr/local/lib/pkgconfig:/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs symphony > /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[5]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[4]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY/SYMPHONY'
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[3]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/00_pkg_src/lpsymphony/src/SYMPHONY'
touch SYMPHONY.ts
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -ISYMPHONY/include -I/usr/local/include    -fpic  -g -O2  -Wall -c lp_symphony.cc -o lp_symphony.o
installing to /home/biocbuild/bbs-3.3-bioc/meat/lpsymphony.Rcheck/lpsymphony/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lpsymphony)

lpsymphony.Rcheck/lpsymphony-Ex.timings:

nameusersystemelapsed
lpsymphony_solve0.2290.0010.082