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BioC 3.3: BUILD report for jmosaics on moscato2

This page was generated on 2016-10-13 12:51:20 -0700 (Thu, 13 Oct 2016).

Package 610/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
jmosaics 1.12.0
Xin Zeng
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/jmosaics
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: jmosaics
Version: 1.12.0
Command: chmod a+r jmosaics -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data jmosaics
StartedAt: 2016-10-12 21:52:00 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 21:53:01 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 60.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r jmosaics -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data jmosaics
###
##############################################################################
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* checking for file 'jmosaics/DESCRIPTION' ... OK
* preparing 'jmosaics':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: mosaics
Loading required package: Rcpp
Warning: Package 'jmosaics' is deprecated and will be removed from Bioconductor
  version 3.3

Error: processing vignette 'jmosaics.Rnw' failed with diagnostics:
 chunk 6 (label = readBinsMultiple) 
Error in FUN(X[[i]], ...) : 
  no slot of name "seqDepth" for this object of class "BinData"
Execution halted