inSilicoDb 2.8.0
InSilico DB
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/inSilicoDb | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | ERROR | skipped | | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data inSilicoDb
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* checking for file ‘inSilicoDb/DESCRIPTION’ ... OK
* preparing ‘inSilicoDb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: rjson
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: RCurl
Loading required package: bitops
Warning: Package 'inSilicoDb' is deprecated and will be removed from
Bioconductor version 3.3
INSILICODB: Welcome RPackage Tester
INSILICODB: The dataset you requested is available for download.
INSILICODB: Dataset GSE4635, GPL96, CURESET, PROBE, ORIGINAL, 37769, RNA, Proteomic and Genomic Profiling of Bronchial Epithelial Cells in Never and Current Smokers, finished, GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
INSILICODB: Requested dataset stored in local file: cache/GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
INSILICODB: The dataset you requested is available for download.
INSILICODB: Dataset GSE4635, GPL96, CURESET, PROBE, ORIGINAL, 37769, RNA, Proteomic and Genomic Profiling of Bronchial Epithelial Cells in Never and Current Smokers, finished, GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
INSILICODB: Requested dataset found in local file: cache/GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
Attaching package: ‘limma’
The following object is masked from ‘package:BiocGenerics’:
plotMA
INSILICODB: The dataset you requested is available for download.
INSILICODB: Dataset GSE4635, GPL96, CURESET, GENE, FRMA, 37769, RNA, Proteomic and Genomic Profiling of Bronchial Epithelial Cells in Never and Current Smokers, finished, GSE4635GPL96_RNA_FRMAGENE_37769.RData
INSILICODB: Requested dataset stored in local file: cache/GSE4635GPL96_RNA_FRMAGENE_37769.RData
INSILICODB: The dataset you requested could not be computed. We are sorry for the inconvenience.
Error: processing vignette 'inSilicoDb.Rnw' failed with diagnostics:
chunk 6 (label = example_getDataset_norm)
Error : Stopped because of previous errors
Execution halted