gprege 1.16.0 Alfredo Kalaitzis
 | Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) |  | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/gprege |  | Last Changed Rev: 118171 / Revision: 122332 |  | Last Changed Date: 2016-06-03 15:10:37 -0700 (Fri, 03 Jun 2016) |  
  | zin2  | Linux (Ubuntu 14.04.2 LTS) / x86_64  |  NotNeeded  |  ERROR  |  skipped  |  |  | 
| moscato2  | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  |  NotNeeded  | [ ERROR ] |  skipped  |  skipped  |  | 
| oaxaca  | Mac OS X Mavericks (10.9.5) / x86_64  |  NotNeeded  |  ERROR  |  skipped  |  skipped  |  | 
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### Running command:
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###   chmod a+r gprege -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gprege
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* checking for file 'gprege/DESCRIPTION' ... OK
* preparing 'gprege':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: gptk
Loading required package: Matrix
Loading required package: fields
Loading required package: spam
Loading required package: grid
Spam version 1.4-0 (2016-08-29) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: 'spam'
The following objects are masked from 'package:base':
    backsolve, forwardsolve
Loading required package: maps
Error: processing vignette 'gprege_quick.Rnw' failed with diagnostics:
 chunk 7 
Error in which(DGatta_labels_byTSNItop100) : 
  object 'DGatta_labels_byTSNItop100' not found
Execution halted