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BioC 3.3: INSTALL report for ggbio on moscato2

This page was generated on 2016-10-13 12:50:17 -0700 (Thu, 13 Oct 2016).

Package 485/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ggbio 1.20.2
Michael Lawrence
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/ggbio
Last Changed Rev: 119618 / Revision: 122332
Last Changed Date: 2016-07-25 05:08:32 -0700 (Mon, 25 Jul 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: ggbio
Version: 1.20.2
Command: rm -rf ggbio.buildbin-libdir && mkdir ggbio.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/ggbio_1.20.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=ggbio.buildbin-libdir --merge-multiarch ggbio_1.20.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL ggbio_1.20.2.zip && rm ggbio_1.20.2.tar.gz ggbio_1.20.2.zip
StartedAt: 2016-10-12 19:21:48 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 19:23:36 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 108.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf ggbio.buildbin-libdir && mkdir ggbio.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/ggbio_1.20.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=ggbio.buildbin-libdir --merge-multiarch ggbio_1.20.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL ggbio_1.20.2.zip  && rm ggbio_1.20.2.tar.gz ggbio_1.20.2.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'ggbio' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
Warning: subclass "ExonrankFilter" of class "BasicFilter" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning: subclass "ExonrankFilter" of class "BasicFilter" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Creating a new generic function for 'rescale' in package 'ggbio'
Creating a new generic function for 'xlim' in package 'ggbio'
Creating a generic function for 'print' from package 'base' in package 'ggbio'
Creating a new generic function for 'geom_rect' in package 'ggbio'
Creating a new generic function for 'geom_segment' in package 'ggbio'
Creating a new generic function for 'geom_bar' in package 'ggbio'
Creating a new generic function for 'stat_identity' in package 'ggbio'
Creating a new generic function for 'stat_bin' in package 'ggbio'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'

install for x64

* installing *source* package 'ggbio' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
* MD5 sums
packaged installation of 'ggbio' as ggbio_1.20.2.zip
* DONE (ggbio)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'ggbio' successfully unpacked and MD5 sums checked