genefu 2.3.1
Benjamin Haibe-Kains , Markus Schroeder
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu | | Last Changed Rev: 109636 / Revision: 109948 | | Last Changed Date: 2015-10-14 17:36:14 -0400 (Wed, 14 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r genefu -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data genefu
###
##############################################################################
##############################################################################
* checking for file 'genefu/DESCRIPTION' ... OK
* preparing 'genefu':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .Warning: c:/biocbld/bbs-3.3-bioc/tmpdir/Rtmpi6seFf/Rbuild198c6fa8394d/genefu/man/ihc4.Rd:71: All text must be in a section
......
Creating pdf output from LaTeX ...
Saving output to 'c:/biocbld/bbs-3.3-bioc/tmpdir/Rtmpi6seFf/Rbuild198c6fa8394d/genefu/build/genefu.pdf' ...
Done
* creating vignettes ...Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: survcomp
Loading required package: survival
Loading required package: prodlim
Loading required package: mclust
Package 'mclust' version 5.0.2
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: limma
Loading required package: biomaRt
Loading required package: iC10
Loading required package: pamr
Loading required package: cluster
Loading required package: iC10TrainingData
Loading required package: AIMS
Loading required package: e1071
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:limma':
plotMA
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
sapply, setdiff, sort, table, tapply, union, unique, unlist,
unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: grid
Loading required package: lattice
Loading required package: ggplot2
Attaching package: 'caret'
The following object is masked from 'package:survival':
cluster
Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "genefu.tex" --max-iterations=20 -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'genefu.tex' failed
LaTeX errors:
enefu.tex:142: pdfTeX error (font expansion): auto expansion is only possible w
ith scalable fonts
Here is how much of TeX's memory you used:
enefu.tex:142: ==> Fatal error occurred, no output PDF file produced!
Execution halted