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BioC 3.3: INSTALL report for flowPeaks on moscato2

This page was generated on 2016-10-13 12:50:40 -0700 (Thu, 13 Oct 2016).

Package 404/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.14.0
Yongchao Ge
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/flowPeaks
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.14.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/flowPeaks_1.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.14.0.zip && rm flowPeaks_1.14.0.tar.gz flowPeaks_1.14.0.zip
StartedAt: 2016-10-12 18:29:21 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:30:49 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 88.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/flowPeaks_1.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.14.0.zip  && rm flowPeaks_1.14.0.tar.gz flowPeaks_1.14.0.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'flowPeaks' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -Lc:/local323/i386/lib -lgsl -lgslcblas -lm -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowPeaks' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -Lc:/local323/x64/lib -lgsl -lgslcblas -lm -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.14.0.zip
* DONE (flowPeaks)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked