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BioC 3.3: BUILD report for deepSNV on oaxaca

This page was generated on 2016-10-13 12:58:12 -0700 (Thu, 13 Oct 2016).

Package 284/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
deepSNV 1.18.3
Moritz Gerstung
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/deepSNV
Last Changed Rev: 117853 / Revision: 122332
Last Changed Date: 2016-05-25 11:12:49 -0700 (Wed, 25 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: deepSNV
Version: 1.18.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data deepSNV
StartedAt: 2016-10-12 20:13:36 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 20:14:33 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 57.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data deepSNV
###
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* checking for file ‘deepSNV/DESCRIPTION’ ... OK
* preparing ‘deepSNV’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Error: processing vignette 'shearwaterML.Rmd' failed with diagnostics:
It seems you should call rmarkdown::render() instead of knitr::knit2html() because shearwaterML.Rmd appears to be an R Markdown v2 document.
Execution halted