Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.3: INSTALL report for csaw on zin2

This page was generated on 2016-10-13 12:45:04 -0700 (Thu, 13 Oct 2016).

Package 261/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
csaw 1.6.1
Aaron Lun
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/csaw
Last Changed Rev: 117853 / Revision: 122332
Last Changed Date: 2016-05-25 11:12:49 -0700 (Wed, 25 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: csaw
Version: 1.6.1
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL csaw
StartedAt: 2016-10-12 18:20:20 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:20:45 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 25.4 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL csaw
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.3-bioc/R/library’
* installing *source* package ‘csaw’ ...
** libs
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c annotator.cpp -o annotator.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c bam_utils.cpp -o bam_utils.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c best_in_cluster.cpp -o best_in_cluster.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c check_bimodality.cpp -o check_bimodality.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c correlate_reads.cpp -o correlate_reads.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c find_maxima.cpp -o find_maxima.o
find_maxima.cpp: In function ‘SEXPREC* find_maxima(SEXP, SEXP, SEXP, SEXP, SEXP)’:
find_maxima.cpp:90:4: warning: ‘is_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
    while (right_copy >= is_max) { 
    ^
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c get_cluster_stats.cpp -o get_cluster_stats.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c get_profile.cpp -o get_profile.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c get_rle_counts.cpp -o get_rle_counts.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c merge_windows.cpp -o merge_windows.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c pair_reads.cpp -o pair_reads.o
g++ -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/zlibbioc/include"   -fpic  -g -O2  -Wall -c single_reads.cpp -o single_reads.o
g++ -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o csaw.so annotator.o bam_utils.o best_in_cluster.o check_bimodality.o correlate_reads.o find_maxima.o get_cluster_stats.o get_profile.o get_rle_counts.o init.o merge_windows.o pair_reads.o single_reads.o -L/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/lib -Wl,-rpath,/home/biocbuild/bbs-3.3-bioc/R/library/Rhtslib/lib -lhts -lz -pthread -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.3-bioc/R/library/csaw/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘csaw.Rnw’ 
** testing if installed package can be loaded
* DONE (csaw)