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BioC 3.3: INSTALL report for csaw on windows2.bioconductor.org

This page was generated on 2015-10-27 12:15:49 -0400 (Tue, 27 Oct 2015).

Package 239/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
csaw 1.5.0
Aaron Lun
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/csaw
Last Changed Rev: 109613 / Revision: 109948
Last Changed Date: 2015-10-14 12:04:29 -0400 (Wed, 14 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: csaw
Version: 1.5.0
Command: C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/csaw_1.5.0.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch csaw_1.5.0.tar.gz && rm csaw_1.5.0.tar.gz
StartedAt: 2015-10-26 21:14:42 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:15:18 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 36.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux2.bioconductor.org/BBS/3.3/bioc/src/contrib/csaw_1.5.0.tar.gz && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch csaw_1.5.0.tar.gz && rm csaw_1.5.0.tar.gz
###
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##############################################################################


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install for i386

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'csaw' ...
** libs
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c annotator.cpp -o annotator.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c best_in_cluster.cpp -o best_in_cluster.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c check_bimodality.cpp -o check_bimodality.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c correlate_reads.cpp -o correlate_reads.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c find_maxima.cpp -o find_maxima.o
find_maxima.cpp: In function 'SEXPREC* find_maxima(SEXP, SEXP, SEXP, SEXP, SEXP)':
find_maxima.cpp:90:4: warning: 'is_max' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_cluster_stats.cpp -o get_cluster_stats.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_profile.cpp -o get_profile.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_rle_counts.cpp -o get_rle_counts.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
g++ -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c merge_windows.cpp -o merge_windows.o
g++ -m32 -shared -s -static-libgcc -o csaw.dll tmp.def annotator.o best_in_cluster.o check_bimodality.o correlate_reads.o find_maxima.o get_cluster_stats.o get_profile.o get_rle_counts.o init.o merge_windows.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/csaw/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'csaw.Rnw' 
** testing if installed package can be loaded

install for x64

* installing to library 'c:/biocbld/bbs-3.3-bioc/R/library'
* installing *source* package 'csaw' ...
** libs
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c annotator.cpp -o annotator.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c best_in_cluster.cpp -o best_in_cluster.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c check_bimodality.cpp -o check_bimodality.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c correlate_reads.cpp -o correlate_reads.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c find_maxima.cpp -o find_maxima.o
find_maxima.cpp: In function 'SEXPREC* find_maxima(SEXP, SEXP, SEXP, SEXP, SEXP)':
find_maxima.cpp:90:4: warning: 'is_max' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_cluster_stats.cpp -o get_cluster_stats.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_profile.cpp -o get_profile.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c get_rle_counts.cpp -o get_rle_counts.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
g++ -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c merge_windows.cpp -o merge_windows.o
g++ -m64 -shared -s -static-libgcc -o csaw.dll tmp.def annotator.o best_in_cluster.o check_bimodality.o correlate_reads.o find_maxima.o get_cluster_stats.o get_profile.o get_rle_counts.o init.o merge_windows.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/R/library/csaw/libs/x64
** testing if installed package can be loaded
* DONE (csaw)