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BioC 3.3: BUILD BIN report for bacon on oaxaca

This page was generated on 2016-10-13 13:03:01 -0700 (Thu, 13 Oct 2016).

Package 70/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bacon 1.0.5
Maarten van Iterson
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/bacon
Last Changed Rev: 120385 / Revision: 122332
Last Changed Date: 2016-08-24 05:54:07 -0700 (Wed, 24 Aug 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: bacon
Version: 1.0.5
Command: rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.0.5.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
StartedAt: 2016-10-13 07:24:17 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:24:22 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 5.1 seconds
RetCode: 0
Status:  OK 
PackageFile: bacon_1.0.5.tgz
PackageFileSize: 825.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.0.5.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bacon.buildbin-libdir bacon_1.0.5.tar.gz'
>>>>>>> 

* installing *source* package ‘bacon’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stddef.h:77:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c bacon.c -o bacon.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bacon.so Rinit.o bacon.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/bacon.buildbin-libdir/bacon/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘bacon’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bacon)


>>>>>>> 
>>>>>>> FIXING LINKS FOR bacon.buildbin-libdir/bacon/libs//bacon.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "bacon.buildbin-libdir/bacon/libs//bacon.so"