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BioC 3.3: BUILD BIN report for SomatiCA on oaxaca

This page was generated on 2016-10-13 12:58:55 -0700 (Thu, 13 Oct 2016).

Package 1096/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomatiCA 2.2.1
Mengjie Chen
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/SomatiCA
Last Changed Rev: 120229 / Revision: 122332
Last Changed Date: 2016-08-17 16:42:03 -0700 (Wed, 17 Aug 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: SomatiCA
Version: 2.2.1
Command: rm -rf SomatiCA.buildbin-libdir && mkdir SomatiCA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SomatiCA_2.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SomatiCA.buildbin-libdir
StartedAt: 2016-10-13 08:02:23 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 08:02:32 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 9.6 seconds
RetCode: 0
Status:  OK 
PackageFile: SomatiCA_2.2.1.tgz
PackageFileSize: 1.086 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SomatiCA.buildbin-libdir && mkdir SomatiCA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SomatiCA_2.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SomatiCA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SomatiCA.buildbin-libdir SomatiCA_2.2.1.tar.gz'
>>>>>>> 

* installing *source* package ‘SomatiCA’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘sn::coef’ by ‘rebmix::coef’ when loading ‘SomatiCA’
Warning: replacing previous import ‘rebmix::split’ by ‘GenomicRanges::split’ when loading ‘SomatiCA’
Warning: replacing previous import ‘sn::sd’ by ‘IRanges::sd’ when loading ‘SomatiCA’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘sn::coef’ by ‘rebmix::coef’ when loading ‘SomatiCA’
Warning: replacing previous import ‘rebmix::split’ by ‘GenomicRanges::split’ when loading ‘SomatiCA’
Warning: replacing previous import ‘sn::sd’ by ‘IRanges::sd’ when loading ‘SomatiCA’
Warning: Package 'SomatiCA' is deprecated and will be removed from Bioconductor
  version 3.3
* DONE (SomatiCA)