SeqArray 1.12.9
Xiuwen Zheng
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/SeqArray | | Last Changed Rev: 121528 / Revision: 122332 | | Last Changed Date: 2016-09-29 01:10:38 -0700 (Thu, 29 Sep 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | [ OK ] | OK | OK | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘SeqArray’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c ConvToGDS.cpp -o ConvToGDS.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c FileMerge.cpp -o FileMerge.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c GetData.cpp -o GetData.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c Index.cpp -o Index.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c LinkSNPRelate.cpp -o LinkSNPRelate.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c Methods.cpp -o Methods.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c R_SeqArray.c -o R_SeqArray.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c ReadBySample.cpp -o ReadBySample.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c ReadByVariant.cpp -o ReadByVariant.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c SeqArray.cpp -o SeqArray.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c pkg_test.cpp -o pkg_test.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/gdsfmt/include" -fPIC -Wall -mtune=core2 -g -O2 -c vectorization.c -o vectorization.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o pkg_test.o vectorization.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.3/Resources/library/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)