SISPA 1.2.1
Bhakti Dwivedi
| Snapshot Date: 2016-05-12 17:20:23 -0700 (Thu, 12 May 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/SISPA | | Last Changed Rev: 117324 / Revision: 117432 | | Last Changed Date: 2016-05-11 16:15:25 -0700 (Wed, 11 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf SISPA.buildbin-libdir SISPA.Rcheck && mkdir SISPA.buildbin-libdir SISPA.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SISPA.buildbin-libdir SISPA_1.2.1.tar.gz >SISPA.Rcheck\00install.out 2>&1 && cp SISPA.Rcheck\00install.out SISPA-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=SISPA.buildbin-libdir --install="check:SISPA-install.out" --force-multiarch --no-vignettes --timings SISPA_1.2.1.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/SISPA.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SISPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SISPA' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SISPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SISPA: no visible binding for global variable 'feature1'
SISPA: no visible binding for global variable 'feature2'
cptSamples : cptsPlot: no visible global function definition for
'abline'
cptSamples : cptsPlot: no visible global function definition for 'text'
freqplot: no visible binding for global variable 'sample_groups'
freqplot: no visible binding for global variable 'value'
waterfallplot: no visible binding for global variable 'type'
waterfallplot: no visible binding for global variable 'samples'
waterfallplot: no visible binding for global variable 'End'
waterfallplot: no visible binding for global variable 'Start'
Undefined global functions or variables:
End Start abline feature1 feature2 sample_groups samples text type
value
Consider adding
importFrom("graphics", "abline", "text")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
'figure'
Please remove from your package.
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'E:/biocbld/bbs-3.3-bioc/meat/SISPA.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SISPA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'SISPA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SISPA' as SISPA_1.2.1.zip
* DONE (SISPA)