SICtools 1.1.0
Xiaobin Xing
| Snapshot Date: 2016-01-07 17:20:33 -0800 (Thu, 07 Jan 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SICtools | | Last Changed Rev: 112139 / Revision: 112308 | | Last Changed Date: 2016-01-04 08:07:24 -0800 (Mon, 04 Jan 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### chmod a+r SICtools -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SICtools
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* checking for file 'SICtools/DESCRIPTION' ... OK
* preparing 'SICtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "E:\biocbld\bbs-3.3-bioc\tmpdir\Rtmpm6FIbn\Rinst18b42b11576f" --no-multiarch "E:/biocbld/bbs-3.3-bioc/tmpdir/Rtmpm6FIbn/Rbuild18b43c93c08/SICtools"' had status 1
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* installing *source* package 'SICtools' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c bam.c -o bam.o
In file included from bam.h:52:0,
from bam.c:5:
bgzf.h:33:18: fatal error: zlib.h: No such file or directory
compilation terminated.
make: *** [bam.o] Error 1
Warning: running command 'make -f "E:/biocbld/BBS-3˜1.3-B/R/etc/x64/Makeconf" -f "E:/biocbld/BBS-3˜1.3-B/R/share/make/winshlib.mk" SHLIB="SICtools.dll" WIN=64 TCLBIN=64 OBJECTS="bam.o bam2bcf.o bam2bcf_indel.o bam2depth.o bam_aux.o bam_cat.o bam_color.o bam_import.o bam_index.o bam_lpileup.o bam_mate.o bam_md.o bam_pileup.o bam_plcmd.o bam_reheader.o bam_rmdup.o bam_rmdupse.o bam_sort.o bam_stat.o bam_tview.o bam_tview_curses.o bam_tview_html.o bamshuf.o bamtk.o bedcov.o bedidx.o bgzf.o bgzip.o chk_indel.o cut_target.o errmod.o faidx.o kaln.o knetfile.o kprobaln.o kstring.o padding.o phase.o razf.o razip.o sam.o sam_header.o sam_view.o sample.o"' had status 2
ERROR: compilation failed for package 'SICtools'
* removing 'E:/biocbld/bbs-3.3-bioc/tmpdir/Rtmpm6FIbn/Rinst18b42b11576f/SICtools'
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ERROR: package installation failed