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BioC 3.3: BUILD report for RCytoscape on morelia

This page was generated on 2016-04-05 12:44:59 -0700 (Tue, 05 Apr 2016).

Package 929/1193HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCytoscape 1.21.1
Paul Shannon
Snapshot Date: 2016-04-04 17:20:23 -0700 (Mon, 04 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCytoscape
Last Changed Rev: 112953 / Revision: 115792
Last Changed Date: 2016-01-27 10:46:33 -0800 (Wed, 27 Jan 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: RCytoscape
Version: 1.21.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
StartedAt: 2016-04-04 19:37:54 -0700 (Mon, 04 Apr 2016)
EndedAt: 2016-04-04 19:38:10 -0700 (Mon, 04 Apr 2016)
EllapsedTime: 15.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
###
##############################################################################
##############################################################################


* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* preparing ‘RCytoscape’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: XMLRPC

Error: processing vignette 'RCytoscape.Rnw' failed with diagnostics:
 chunk 1 (label = g0) 
Error in function (type, msg, asError = TRUE)  : 
  Failed connect to taipan:5000; Connection refused
Execution halted