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BioC 3.3: BUILD report for RCytoscape on linux2.bioconductor.org

This page was generated on 2015-10-27 12:11:52 -0400 (Tue, 27 Oct 2015).

Package 857/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCytoscape 1.21.0
Paul Shannon
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCytoscape
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  skipped  skipped 

Summary

Package: RCytoscape
Version: 1.21.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
StartedAt: 2015-10-26 22:27:24 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 22:27:33 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
###
##############################################################################
##############################################################################


* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* preparing ‘RCytoscape’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Loading required package: XMLRPC

Error: processing vignette 'RCytoscape.Rnw' failed with diagnostics:
 chunk 1 (label = g0) 
Error in function (type, msg, asError = TRUE)  : 
  Could not resolve host: taipan
Execution halted