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BioC 3.3: BUILD report for RCyjs on windows2.bioconductor.org

This page was generated on 2015-10-27 12:16:03 -0400 (Tue, 27 Oct 2015).

Package 856/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCyjs 1.3.0
Paul Shannon
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCyjs
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: RCyjs
Version: 1.3.0
Command: chmod a+r RCyjs -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RCyjs
StartedAt: 2015-10-26 23:38:31 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 23:38:35 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 4.6 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r RCyjs -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RCyjs
###
##############################################################################
##############################################################################


* checking for file 'RCyjs/DESCRIPTION' ... OK
* preparing 'RCyjs':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: BrowserViz
Loading required package: Rcpp
Loading required package: jsonlite

Attaching package: 'jsonlite'

The following object is masked from 'package:utils':

    View

Loading required package: httpuv

Attaching package: 'BrowserViz'

The following object is masked from 'package:jsonlite':

    toJSON

Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    as.vector, cbind, colnames, do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unlist, unsplit


Attaching package: 'RCyjs'

The following object is masked from 'package:graphics':

    layout


Error: processing vignette 'RCyjs.Rnw' failed with diagnostics:
 chunk 3 (label = simpleRender) 
Error in .getBrowser() : BrowserViz not (yet) supported on Windows.
Execution halted