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BioC 3.3: BUILD report for RCyjs on morelia

This page was generated on 2016-04-05 12:49:14 -0700 (Tue, 05 Apr 2016).

Package 928/1193HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCyjs 1.3.8
Paul Shannon
Snapshot Date: 2016-04-04 17:20:23 -0700 (Mon, 04 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RCyjs
Last Changed Rev: 114088 / Revision: 115792
Last Changed Date: 2016-02-28 20:22:43 -0800 (Sun, 28 Feb 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: RCyjs
Version: 1.3.8
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCyjs
StartedAt: 2016-04-04 22:06:37 -0700 (Mon, 04 Apr 2016)
EndedAt: 2016-04-04 22:23:32 -0700 (Mon, 04 Apr 2016)
EllapsedTime: 1014.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCyjs
###
##############################################################################
##############################################################################


* checking for file ‘RCyjs/DESCRIPTION’ ... OK
* preparing ‘RCyjs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BrowserViz
Loading required package: jsonlite
Loading required package: httpuv

Attaching package: ‘BrowserViz’

The following object is masked from ‘package:jsonlite’:

    toJSON

Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    cbind, colnames, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit


Attaching package: ‘RCyjs’

The following object is masked from ‘package:graphics’:

    layout

sh: phantomjs: command not found

Error: processing vignette 'RCyjs.Rnw' failed with diagnostics:
 chunk 3 (label = simpleRender) 
Error : totalWait < maxWaitPermitted is not TRUE
Execution halted