MEIGOR 1.5.0
Jose Egea
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MEIGOR | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf MEIGOR.buildbin-libdir MEIGOR.Rcheck && mkdir MEIGOR.buildbin-libdir MEIGOR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEIGOR.buildbin-libdir MEIGOR_1.5.0.tar.gz >MEIGOR.Rcheck\00install.out 2>&1 && cp MEIGOR.Rcheck\00install.out MEIGOR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MEIGOR.buildbin-libdir --install="check:MEIGOR-install.out" --force-multiarch --no-vignettes --timings MEIGOR_1.5.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/MEIGOR.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEIGOR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEIGOR' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEIGOR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
initialize: possible error in runif(seed = options$seed): unused
argument (seed = options$seed)
initialize_and_pool: no visible binding for global variable 'mulichain'
nls_fobj: no visible binding for global variable 'fobj_global'
nls_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
nls_fobj: no visible binding for global variable 'n_fun_eval'
optim_fobj: no visible binding for global variable 'fobj_global'
optim_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
optim_fobj: no visible binding for global variable 'n_fun_eval'
runBayesFit : prior: no visible binding for global variable
'prior_mean'
runBayesFit : prior: no visible binding for global variable 'prior_var'
solnp_eq: no visible binding for global variable 'fobj_global'
solnp_eq: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_eq: no visible binding for global variable 'n_fun_eval'
solnp_eq: no visible binding for global variable 'neq_global'
solnp_fobj: no visible binding for global variable 'fobj_global'
solnp_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_fobj: no visible binding for global variable 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'fobj_global'
solnp_ineq: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'neq_global'
solnp_ineq: no visible binding for global variable 'nconst_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'n_fun_eval'
ssm_localsolver: no visible binding for '<<-' assignment to
'fobj_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'neq_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'nconst_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'extra_args'
ssm_localsolver: no visible binding for global variable 'n_fun_eval'
ssm_localsolver: no visible binding for global variable 'extra_args'
Undefined global functions or variables:
extra_args fobj_global mulichain n_fun_eval nconst_global neq_global
prior_mean prior_var
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [42s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
essR 9.37 0.01 9.39
cur_params 8.49 0.00 8.51
runBayesFit 7.35 0.02 7.36
CeVNSR 0.35 0.00 8.09
CeSSR 0.11 0.00 7.05
** running examples for arch 'x64' ... [49s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
runBayesFit 9.84 0.00 9.85
essR 9.64 0.08 9.71
cur_params 9.70 0.02 9.72
CeVNSR 0.26 0.00 9.35
CeSSR 0.21 0.01 8.72
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'c:/biocbld/bbs-3.3-bioc/meat/MEIGOR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'MEIGOR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MEIGOR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEIGOR' as MEIGOR_1.5.0.zip
* DONE (MEIGOR)