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BioC 3.3: BUILD BIN report for Linnorm on oaxaca

This page was generated on 2016-10-13 13:03:08 -0700 (Thu, 13 Oct 2016).

Package 629/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Linnorm 1.0.6
Ken Shun Hang Yip
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/Linnorm
Last Changed Rev: 120535 / Revision: 122332
Last Changed Date: 2016-08-27 01:04:37 -0700 (Sat, 27 Aug 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: Linnorm
Version: 1.0.6
Command: rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.0.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
StartedAt: 2016-10-13 07:44:12 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:44:20 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 7.4 seconds
RetCode: 0
Status:  OK 
PackageFile: Linnorm_1.0.6.tgz
PackageFileSize: 2.049 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_1.0.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Linnorm.buildbin-libdir Linnorm_1.0.6.tar.gz'
>>>>>>> 

* installing *source* package ‘Linnorm’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c Misc.cpp -o Misc.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Linnorm.so Misc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Linnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"