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BioC 3.3: CHECK report for HilbertCurve on windows2.bioconductor.org

This page was generated on 2015-10-27 12:16:10 -0400 (Tue, 27 Oct 2015).

Package 493/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.1.0
Zuguang Gu
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HilbertCurve
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.1.0
Command: rm -rf HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && mkdir HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertCurve.buildbin-libdir HilbertCurve_1.1.0.tar.gz >HilbertCurve.Rcheck\00install.out 2>&1 && cp HilbertCurve.Rcheck\00install.out HilbertCurve-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=HilbertCurve.buildbin-libdir --install="check:HilbertCurve-install.out" --force-multiarch --no-vignettes --timings HilbertCurve_1.1.0.tar.gz
StartedAt: 2015-10-27 03:14:15 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 03:16:32 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 136.4 seconds
RetCode: 0
Status:  OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && mkdir HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertCurve.buildbin-libdir HilbertCurve_1.1.0.tar.gz >HilbertCurve.Rcheck\00install.out 2>&1 && cp HilbertCurve.Rcheck\00install.out HilbertCurve-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=HilbertCurve.buildbin-libdir --install="check:HilbertCurve-install.out" --force-multiarch --no-vignettes --timings HilbertCurve_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/HilbertCurve.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertCurve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HilbertCurve' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertCurve' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
hc_layer-HilbertCurve-method 12.55   0.41   12.96
hc_png-HilbertCurve-method    6.62   0.06    6.70
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
hc_layer-HilbertCurve-method 14.00   0.45   14.45
hc_png-HilbertCurve-method    7.28   0.06    7.34
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R' [2s]
 [3s] OK
** running tests for arch 'x64' ...
  Running 'test-all.R' [3s]
 [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'c:/biocbld/bbs-3.3-bioc/meat/HilbertCurve.Rcheck/00check.log'
for details.


HilbertCurve.Rcheck/00install.out:


install for i386

* installing *source* package 'HilbertCurve' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'HilbertCurve' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HilbertCurve' as HilbertCurve_1.1.0.zip
* DONE (HilbertCurve)

HilbertCurve.Rcheck/examples_i386/HilbertCurve-Ex.timings:

nameusersystemelapsed
HilbertCurve-class000
HilbertCurve0.330.030.36
hc_layer-HilbertCurve-method12.55 0.4112.96
hc_level-HilbertCurve-method0.010.000.01
hc_normal_points-HilbertCurve-method000
hc_png-HilbertCurve-method6.620.066.70
hc_points-HilbertCurve-method0.390.000.39
hc_rect-HilbertCurve-method0.050.000.05
hc_segmented_points-HilbertCurve-method000
hc_segments-HilbertCurve-method0.060.000.06
hc_text-HilbertCurve-method0.020.020.03
show-HilbertCurve-method000
unzoom-HilbertCurve-method000
zoom-HilbertCurve-method0.020.000.02

HilbertCurve.Rcheck/examples_x64/HilbertCurve-Ex.timings:

nameusersystemelapsed
HilbertCurve-class000
HilbertCurve0.410.010.42
hc_layer-HilbertCurve-method14.00 0.4514.45
hc_level-HilbertCurve-method0.030.000.03
hc_normal_points-HilbertCurve-method000
hc_png-HilbertCurve-method7.280.067.34
hc_points-HilbertCurve-method0.640.020.66
hc_rect-HilbertCurve-method0.050.000.05
hc_segmented_points-HilbertCurve-method000
hc_segments-HilbertCurve-method0.070.000.07
hc_text-HilbertCurve-method0.030.000.04
show-HilbertCurve-method000
unzoom-HilbertCurve-method0.020.000.01
zoom-HilbertCurve-method000