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BioC 3.3: INSTALL report for DESeq on moscato2

This page was generated on 2016-10-13 12:49:13 -0700 (Thu, 13 Oct 2016).

Package 294/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.24.0
Simon Anders
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/DESeq
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DESeq
Version: 1.24.0
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/DESeq_1.24.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.24.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL DESeq_1.24.0.zip && rm DESeq_1.24.0.tar.gz DESeq_1.24.0.zip
StartedAt: 2016-10-12 18:48:07 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:49:40 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 93.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/DESeq_1.24.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.24.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL DESeq_1.24.0.zip  && rm DESeq_1.24.0.tar.gz DESeq_1.24.0.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq' as DESeq_1.24.0.zip
* DONE (DESeq)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'DESeq' successfully unpacked and MD5 sums checked