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This page was generated on 2016-10-13 12:45:32 -0700 (Thu, 13 Oct 2016).
| Package 234/1210 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ComplexHeatmap 1.10.2 Zuguang Gu
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] |  | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | | |||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 1.10.2 |
| Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.10.2.tar.gz |
| StartedAt: 2016-10-13 00:50:08 -0700 (Thu, 13 Oct 2016) |
| EndedAt: 2016-10-13 00:52:00 -0700 (Thu, 13 Oct 2016) |
| EllapsedTime: 111.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.10.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/ComplexHeatmap.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘1.10.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 3.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
+.AdditiveUnit: no visible global function definition for ‘new’
AdditiveUnit: no visible global function definition for ‘new’
ColorMapping: no visible global function definition for ‘new’
Heatmap: no visible global function definition for ‘new’
HeatmapAnnotation: no visible global function definition for ‘new’
HeatmapList: no visible global function definition for ‘new’
SingleAnnotation: no visible global function definition for ‘new’
add_heatmap,Heatmap: no visible global function definition for ‘new’
add_heatmap,HeatmapAnnotation: no visible global function definition
for ‘new’
draw,Heatmap: no visible global function definition for ‘new’
draw_heatmap_body,Heatmap: no visible global function definition for
‘getFromNamespace’
show,HeatmapAnnotation: no visible global function definition for
‘show’
Undefined global functions or variables:
getFromNamespace new show
Consider adding
importFrom("methods", "new", "show")
importFrom("utils", "getFromNamespace")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 12.161 0.019 12.241
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.3-bioc/meat/ComplexHeatmap.Rcheck/00check.log’
for details.
ComplexHeatmap.Rcheck/00install.out:
* installing *source* package ‘ComplexHeatmap’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/ComplexHeatmap-Ex.timings:
| name | user | system | elapsed | |
| AdditiveUnit-class | 0.001 | 0.000 | 0.001 | |
| AdditiveUnit | 0.000 | 0.003 | 0.001 | |
| ColorMapping-class | 0 | 0 | 0 | |
| ColorMapping | 0.016 | 0.001 | 0.017 | |
| ComplexHeatmap-package | 0 | 0 | 0 | |
| Heatmap-class | 0.001 | 0.000 | 0.001 | |
| Heatmap | 12.161 | 0.019 | 12.241 | |
| HeatmapAnnotation-class | 0.001 | 0.000 | 0.001 | |
| HeatmapAnnotation | 0.087 | 0.004 | 0.091 | |
| HeatmapList-class | 4.113 | 0.004 | 4.169 | |
| HeatmapList | 0.001 | 0.000 | 0.000 | |
| Legend | 0.001 | 0.000 | 0.000 | |
| SingleAnnotation-class | 0.000 | 0.000 | 0.001 | |
| SingleAnnotation | 0.080 | 0.000 | 0.079 | |
| add.AdditiveUnit | 4.628 | 0.008 | 4.856 | |
| add_heatmap-Heatmap-method | 1.163 | 0.000 | 1.184 | |
| add_heatmap-HeatmapAnnotation-method | 0.464 | 0.000 | 0.469 | |
| add_heatmap-HeatmapList-method | 1.970 | 0.000 | 1.997 | |
| add_heatmap-dispatch | 0.000 | 0.000 | 0.001 | |
| anno_barplot | 0.01 | 0.00 | 0.01 | |
| anno_boxplot | 0.027 | 0.000 | 0.027 | |
| anno_density | 0.183 | 0.004 | 0.196 | |
| anno_histogram | 0.042 | 0.000 | 0.042 | |
| anno_link | 1.857 | 0.000 | 1.888 | |
| anno_points | 0.025 | 0.000 | 0.024 | |
| anno_text | 0.340 | 0.000 | 0.351 | |
| annotation_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| color_mapping_legend-ColorMapping-method | 0.192 | 0.004 | 0.196 | |
| columnAnnotation | 0.013 | 0.000 | 0.013 | |
| column_anno_barplot | 0.001 | 0.000 | 0.001 | |
| column_anno_boxplot | 0 | 0 | 0 | |
| column_anno_density | 0.000 | 0.000 | 0.001 | |
| column_anno_histogram | 0 | 0 | 0 | |
| column_anno_link | 0 | 0 | 0 | |
| column_anno_points | 0.001 | 0.000 | 0.000 | |
| column_anno_text | 0 | 0 | 0 | |
| column_dend-Heatmap-method | 0.080 | 0.000 | 0.081 | |
| column_dend-HeatmapList-method | 0.24 | 0.00 | 0.24 | |
| column_dend-dispatch | 0.000 | 0.000 | 0.001 | |
| column_order-Heatmap-method | 0.079 | 0.000 | 0.078 | |
| column_order-HeatmapList-method | 0.234 | 0.000 | 0.234 | |
| column_order-dispatch | 0.000 | 0.000 | 0.001 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0.001 | 0.000 | 0.001 | |
| component_width-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| component_width-dispatch | 0.000 | 0.000 | 0.001 | |
| decorate_annotation | 0.618 | 0.000 | 0.617 | |
| decorate_column_dend | 0.000 | 0.000 | 0.001 | |
| decorate_column_names | 0.000 | 0.000 | 0.001 | |
| decorate_column_title | 0.001 | 0.000 | 0.000 | |
| decorate_dend | 0.372 | 0.000 | 0.372 | |
| decorate_dimnames | 0.377 | 0.000 | 0.393 | |
| decorate_heatmap_body | 0.321 | 0.000 | 0.322 | |
| decorate_row_dend | 0 | 0 | 0 | |
| decorate_row_names | 0.001 | 0.000 | 0.001 | |
| decorate_row_title | 0 | 0 | 0 | |
| decorate_title | 0.353 | 0.000 | 0.353 | |
| densityHeatmap | 3.622 | 0.004 | 3.677 | |
| dist2 | 0.006 | 0.000 | 0.006 | |
| draw-Heatmap-method | 0.353 | 0.007 | 0.375 | |
| draw-HeatmapAnnotation-method | 0.134 | 0.004 | 0.139 | |
| draw-HeatmapList-method | 1.374 | 0.000 | 1.388 | |
| draw-SingleAnnotation-method | 0.117 | 0.000 | 0.120 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_annotation_legend-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| draw_dend-Heatmap-method | 0.000 | 0.004 | 0.001 | |
| draw_dimnames-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_body-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_legend-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_list-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| draw_title-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_title-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| draw_title-dispatch | 0 | 0 | 0 | |
| enhanced_basicplot | 1.017 | 0.000 | 1.029 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0.001 | 0.000 | 0.000 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0.000 | 0.000 | 0.001 | |
| grid.dendrogram | 0.022 | 0.000 | 0.021 | |
| heatmap_legend_size-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| ht_global_opt | 0.000 | 0.000 | 0.001 | |
| is_abs_unit | 0.002 | 0.000 | 0.001 | |
| make_column_cluster-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| make_layout-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| make_layout-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| make_layout-dispatch | 0.001 | 0.000 | 0.001 | |
| make_row_cluster-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| map_to_colors-ColorMapping-method | 0.023 | 0.000 | 0.022 | |
| max_text_height | 0.003 | 0.000 | 0.002 | |
| max_text_width | 0.000 | 0.000 | 0.002 | |
| oncoPrint | 0.000 | 0.000 | 0.001 | |
| plotDataFrame | 2.625 | 0.004 | 2.640 | |
| prepare-Heatmap-method | 0 | 0 | 0 | |
| rowAnnotation | 0.015 | 0.000 | 0.015 | |
| row_anno_barplot | 0.001 | 0.000 | 0.001 | |
| row_anno_boxplot | 0 | 0 | 0 | |
| row_anno_density | 0.001 | 0.000 | 0.001 | |
| row_anno_histogram | 0 | 0 | 0 | |
| row_anno_link | 0.001 | 0.000 | 0.001 | |
| row_anno_points | 0 | 0 | 0 | |
| row_anno_text | 0.001 | 0.000 | 0.001 | |
| row_dend-Heatmap-method | 0.085 | 0.000 | 0.090 | |
| row_dend-HeatmapList-method | 0.237 | 0.000 | 0.237 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0.087 | 0.000 | 0.087 | |
| row_order-HeatmapList-method | 0.239 | 0.000 | 0.241 | |
| row_order-dispatch | 0.001 | 0.000 | 0.001 | |
| selectArea | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0.001 | 0.000 | 0.001 | |
| show-Heatmap-method | 0.874 | 0.000 | 0.899 | |
| show-HeatmapAnnotation-method | 0 | 0 | 0 | |
| show-HeatmapList-method | 0 | 0 | 0 | |
| show-SingleAnnotation-method | 0.001 | 0.000 | 0.001 | |
| show-dispatch | 0 | 0 | 0 | |
| unify_mat_list | 0.000 | 0.000 | 0.001 | |