BioC 3.3: CHECK report for BasicSTARRseq on moscato2

Package: BasicSTARRseq

Version: 1.0.2

Command: rm -rf BasicSTARRseq.buildbin-libdir BasicSTARRseq.Rcheck && mkdir BasicSTARRseq.buildbin-libdir BasicSTARRseq.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BasicSTARRseq.buildbin-libdir BasicSTARRseq_1.0.2.tar.gz >BasicSTARRseq.Rcheck\00install.out 2>&1 && cp BasicSTARRseq.Rcheck\00install.out BasicSTARRseq-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=BasicSTARRseq.buildbin-libdir --install="check:BasicSTARRseq-install.out" --force-multiarch --no-vignettes --timings BasicSTARRseq_1.0.2.tar.gz

StartedAt: 2016-10-13 01:13:16 -0700 (Thu, 13 Oct 2016)

EndedAt: 2016-10-13 01:16:42 -0700 (Thu, 13 Oct 2016)

EllapsedTime: 206.0 seconds

RetCode: 0

Status:  OK

CheckDir: BasicSTARRseq.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BasicSTARRseq.buildbin-libdir BasicSTARRseq.Rcheck && mkdir BasicSTARRseq.buildbin-libdir BasicSTARRseq.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BasicSTARRseq.buildbin-libdir BasicSTARRseq_1.0.2.tar.gz >BasicSTARRseq.Rcheck\00install.out 2>&1 && cp BasicSTARRseq.Rcheck\00install.out BasicSTARRseq-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=BasicSTARRseq.buildbin-libdir --install="check:BasicSTARRseq-install.out" --force-multiarch --no-vignettes --timings BasicSTARRseq_1.0.2.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/BasicSTARRseq.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BasicSTARRseq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BasicSTARRseq' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BasicSTARRseq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getPeaks,STARRseqData : <anonymous>: no visible global function
  definition for 'pbinom'
Undefined global functions or variables:
  pbinom
Consider adding
  importFrom("stats", "pbinom")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.3-bioc/meat/BasicSTARRseq.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BasicSTARRseq' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'sample' in package 'BasicSTARRseq'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BasicSTARRseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BasicSTARRseq' as BasicSTARRseq_1.0.2.zip
* DONE (BasicSTARRseq)

name	user	system	elapsed
STARRseqData-class	0.32	0.00	0.33
getPeaks	0.78	0.00	0.78

name	user	system	elapsed
STARRseqData-class	0.56	0.00	0.89
getPeaks	0.89	0.00	0.88