AnnotationForge 1.14.2 Bioconductor Package Maintainer
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/AnnotationForge | Last Changed Rev: 117513 / Revision: 122332 | Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### cd AnnotationForge.buildbin-libdir/AnnotationForge && zip -r ../../AnnotationForge_1.14.2.zip . & cd ../..
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Scanning files ..
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adding: AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 46%)
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adding: AnnDbPkg-templates/NCBIORG.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION (188 bytes security) (deflated 36%)
adding: AnnDbPkg-templates/NCBIORG.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NCBIORG.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ENZYME.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/FLYBASE.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/FLYBASECG.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/FLYBASEPROT.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd (188 bytes security) (deflated 63%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/MGI.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/PATH.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd (188 bytes security) (deflated 61%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/PROSITE.Rd (188 bytes security) (deflated 46%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/REFSEQ.Rd (188 bytes security) (deflated 62%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/SYMBOL.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/UCSCKG.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/UNIGENE.Rd (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/UNIPROT.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/WORMBASE.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/ZFIN.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/NCBIORG.DB/man/_dbconn.Rd (188 bytes security) (deflated 66%)
adding: AnnDbPkg-templates/NCBIORG.DB/NAMESPACE (188 bytes security) (deflated 44%)
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adding: AnnDbPkg-templates/NCBIORG.DB/tests/ (256 bytes security) (stored 0%)
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adding: AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/NCBIORG.DB/tests/unit/ (256 bytes security) (stored 0%)
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adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/DESCRIPTION (188 bytes security) (deflated 35%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/BASE.Rd (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/_dbconn.Rd (188 bytes security) (deflated 66%)
adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/NAMESPACE (188 bytes security) (deflated 46%)
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adding: AnnDbPkg-templates/NOCHIPSCHEMA.DB/R/zzz.R (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/DESCRIPTION (188 bytes security) (deflated 36%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/man/BASE.Rd (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/man/_dbconn.Rd (188 bytes security) (deflated 66%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/NAMESPACE (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/R/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/NOSCHEMA.DB/R/zzz.R (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/ORGANISM.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/ORGANISM.DB/DESCRIPTION (188 bytes security) (deflated 36%)
adding: AnnDbPkg-templates/ORGANISM.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/ORGANISM.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/ACCNUM.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/ALIAS2EG.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/BASE.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/CHR.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/GENENAME.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/GO.Rd (188 bytes security) (deflated 60%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/GO2ALLEGS.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/PMID.Rd (188 bytes security) (deflated 61%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/REFSEQ.Rd (188 bytes security) (deflated 62%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/SYMBOL.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/UNIGENE.Rd (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/ORGANISM.DB/man/_dbconn.Rd (188 bytes security) (deflated 66%)
adding: AnnDbPkg-templates/ORGANISM.DB/NAMESPACE (188 bytes security) (deflated 44%)
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adding: AnnDbPkg-templates/ORGANISM.DB/tests/ (256 bytes security) (stored 0%)
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adding: AnnDbPkg-templates/ORGANISM.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 47%)
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adding: AnnDbPkg-templates/PFAM.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/PFAM.DB/DESCRIPTION (188 bytes security) (deflated 31%)
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adding: AnnDbPkg-templates/PFAM.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/PFAM.DB/man/ (256 bytes security) (stored 0%)
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adding: AnnDbPkg-templates/PFAM.DB/man/FORWARDBIMAP.Rd (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/PFAM.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/PFAM.DB/man/PDB.Rd (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/PFAM.DB/man/PDB2AC.Rd (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/PFAM.DB/man/REVERSEBIMAP.Rd (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/PFAM.DB/man/SCOP.Rd (188 bytes security) (deflated 46%)
adding: AnnDbPkg-templates/PFAM.DB/man/SCOP2AC.Rd (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/PFAM.DB/man/_dbconn.Rd (188 bytes security) (deflated 65%)
adding: AnnDbPkg-templates/PFAM.DB/NAMESPACE (188 bytes security) (deflated 43%)
adding: AnnDbPkg-templates/PFAM.DB/R/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/PFAM.DB/R/zzz.R (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/YEAST.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/DESCRIPTION (188 bytes security) (deflated 36%)
adding: AnnDbPkg-templates/YEAST.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/man/ALIAS.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/YEAST.DB/man/BASE.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEAST.DB/man/CHR.Rd (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/YEAST.DB/man/CHRLENGTHS.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEAST.DB/man/CHRLOC.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEAST.DB/man/COMMON2ORF.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEAST.DB/man/DESCRIPTION.Rd (188 bytes security) (deflated 52%)
adding: AnnDbPkg-templates/YEAST.DB/man/ENSEMBL.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/YEAST.DB/man/ENSEMBLPROT.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/YEAST.DB/man/ENSEMBLTRANS.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/YEAST.DB/man/ENTREZID.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/YEAST.DB/man/ENZYME.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/YEAST.DB/man/GENENAME.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/YEAST.DB/man/GO.Rd (188 bytes security) (deflated 60%)
adding: AnnDbPkg-templates/YEAST.DB/man/GO2ALLORFS.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/YEAST.DB/man/INTERPRO.Rd (188 bytes security) (deflated 46%)
adding: AnnDbPkg-templates/YEAST.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/YEAST.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEAST.DB/man/PATH.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/YEAST.DB/man/PMID.Rd (188 bytes security) (deflated 61%)
adding: AnnDbPkg-templates/YEAST.DB/man/REFSEQ.Rd (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/YEAST.DB/man/REJECTORF.Rd (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/YEAST.DB/man/SGD.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/YEAST.DB/man/SMART.Rd (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/YEAST.DB/man/UNIPROT.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEAST.DB/man/_dbconn.Rd (188 bytes security) (deflated 65%)
adding: AnnDbPkg-templates/YEAST.DB/NAMESPACE (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/YEAST.DB/R/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/R/zzz.R (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/YEAST.DB/tests/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/tests/runalltests.R (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEAST.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/YEAST.DB/tests/unit/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEAST.DB/tests/unit/test.R (188 bytes security) (deflated 61%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/DESCRIPTION (188 bytes security) (deflated 35%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ALIAS.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/BASE.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/CHR.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLENGTHS.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLOC.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/DESCRIPTION.Rd (188 bytes security) (deflated 52%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ENSEMBL.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME2PROBE.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/GENENAME.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/GO.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/GO2ALLPROBES.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/GO2PROBE.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ORF.Rd (188 bytes security) (deflated 52%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/ORGANISM.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/PATH.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/PATH2PROBE.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/PMID.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/PMID2PROBE.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/man/_dbconn.Rd (188 bytes security) (deflated 65%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/NAMESPACE (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/R/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/R/zzz.R (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/tests/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 46%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R (188 bytes security) (deflated 76%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/DESCRIPTION (188 bytes security) (deflated 36%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/inst/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ACCNUM.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ALIAS2EG.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/BASE.Rd (188 bytes security) (deflated 54%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/CHR.Rd (188 bytes security) (deflated 48%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/CHRLENGTHS.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ENZYME.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/GENENAME.Rd (188 bytes security) (deflated 50%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/GO.Rd (188 bytes security) (deflated 60%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/GO2ALLEGS.Rd (188 bytes security) (deflated 57%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/MAPCOUNTS.Rd (188 bytes security) (deflated 58%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ORF.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/ORGANISM.Rd (188 bytes security) (deflated 51%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/PATH.Rd (188 bytes security) (deflated 55%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/PMID.Rd (188 bytes security) (deflated 61%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/REFSEQ.Rd (188 bytes security) (deflated 62%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/SGD.Rd (188 bytes security) (deflated 53%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/SYMBOL.Rd (188 bytes security) (deflated 56%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/UNIPROT.Rd (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/man/_dbconn.Rd (188 bytes security) (deflated 66%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/NAMESPACE (188 bytes security) (deflated 44%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/R/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/R/zzz.R (188 bytes security) (deflated 59%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/tests/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R (188 bytes security) (deflated 49%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.Rout.save (188 bytes security) (deflated 47%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/ (256 bytes security) (stored 0%)
adding: AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R (188 bytes security) (deflated 61%)
adding: DESCRIPTION (188 bytes security) (deflated 48%)
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adding: doc/makeProbePackage.pdf (188 bytes security) (deflated 8%)
adding: doc/makeProbePackage.R (188 bytes security) (deflated 57%)
adding: doc/makeProbePackage.Rnw (188 bytes security) (deflated 59%)
adding: doc/MakingNewAnnotationPackages.pdf (188 bytes security) (deflated 13%)
adding: doc/MakingNewAnnotationPackages.R (188 bytes security) (deflated 75%)
adding: doc/MakingNewAnnotationPackages.Rnw (188 bytes security) (deflated 65%)
adding: doc/MakingNewOrganismPackages.html (188 bytes security) (deflated 61%)
adding: doc/MakingNewOrganismPackages.R (188 bytes security) (deflated 64%)
adding: doc/MakingNewOrganismPackages.Rmd (188 bytes security) (deflated 58%)
adding: doc/SQLForge.pdf (188 bytes security) (deflated 8%)
adding: doc/SQLForge.R (188 bytes security) (deflated 69%)
adding: doc/SQLForge.Rnw (188 bytes security) (deflated 61%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/finch_info.txt (188 bytes security) (deflated 80%)
adding: extdata/GentlemanLab/ (256 bytes security) (stored 0%)
adding: extdata/GentlemanLab/ANNDBPKG-INDEX.TXT (188 bytes security) (deflated 89%)
adding: extdata/GentlemanLab/chip-batch-script.R (188 bytes security) (deflated 60%)
adding: extdata/GentlemanLab/generateSchemas.R (188 bytes security) (deflated 57%)
adding: extdata/GentlemanLab/org-batch-script.R (188 bytes security) (deflated 61%)
adding: extdata/GO_finch.txt (188 bytes security) (deflated 83%)
adding: extdata/hcg110_ID (188 bytes security) (deflated 62%)
adding: extdata/HG-U95Av2_probe_tab.gz (188 bytes security) (deflated 0%)
adding: extdata/hgu95av2_ID (188 bytes security) (deflated 65%)
adding: extdata/inp8_Full_species_mapping (188 bytes security) (deflated 64%)
adding: extdata/inp8_metadata (188 bytes security) (deflated 27%)
adding: extdata/unigene.txt (188 bytes security) (deflated 37%)
adding: extdata/viableIDs.rda (188 bytes security) (stored 0%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 75%)
adding: help/AnnotationForge.rdb (188 bytes security) (deflated 0%)
adding: help/AnnotationForge.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 84%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 64%)
adding: MD5 (188 bytes security) (deflated 69%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 56%)
adding: NEWS (188 bytes security) (deflated 56%)
adding: NOTES-Herve (188 bytes security) (deflated 50%)
adding: ProbePkg-template/ (256 bytes security) (stored 0%)
adding: ProbePkg-template/data/ (256 bytes security) (stored 0%)
adding: ProbePkg-template/DESCRIPTION (188 bytes security) (deflated 29%)
adding: ProbePkg-template/man/ (256 bytes security) (stored 0%)
adding: ProbePkg-template/man/@PKGNAME@.Rd (188 bytes security) (deflated 47%)
adding: ProbePkg-template/NAMESPACE (188 bytes security) (deflated 8%)
adding: ProbePkg-template/R/ (256 bytes security) (stored 0%)
adding: ProbePkg-template/R/zzz.R (188 bytes security) (deflated 26%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/AnnotationForge (188 bytes security) (deflated 41%)
adding: R/AnnotationForge.rdb (188 bytes security) (deflated 3%)
adding: R/AnnotationForge.rdx (188 bytes security) (stored 0%)
adding: script/ (256 bytes security) (stored 0%)
adding: script/fasterOrgRecipe.R (188 bytes security) (deflated 68%)
adding: script/makeNoSchemaChipDb.R (188 bytes security) (deflated 67%)
adding: script/makeNoSchemaDb.R (188 bytes security) (deflated 64%)
adding: seqnames-template/ (256 bytes security) (stored 0%)
adding: seqnames-template/DESCRIPTION (188 bytes security) (deflated 37%)
adding: seqnames-template/inst/ (256 bytes security) (stored 0%)
adding: seqnames-template/inst/extdata/ (256 bytes security) (stored 0%)
adding: seqnames-template/inst/extdata/dataFiles/ (256 bytes security) (stored 0%)
adding: seqnames-template/inst/extdata/dataFiles/Arabidopsis_thaliana.csv (188 bytes security) (stored 0%)
adding: seqnames-template/inst/extdata/dataFiles/Caenorhabditis_elegans.csv (188 bytes security) (deflated 29%)
adding: seqnames-template/inst/extdata/dataFiles/Cyanidioschyzon_merolae.csv (188 bytes security) (deflated 41%)
adding: seqnames-template/inst/extdata/dataFiles/Drosophila_melanogaster.csv (188 bytes security) (deflated 43%)
adding: seqnames-template/inst/extdata/dataFiles/Homo_sapiens.csv (188 bytes security) (deflated 48%)
adding: seqnames-template/inst/extdata/dataFiles/Oryza_sativa.csv (188 bytes security) (deflated 13%)
adding: seqnames-template/inst/extdata/dataFiles/Populus_trichocarpa.csv (188 bytes security) (deflated 42%)
adding: seqnames-template/inst/extdata/dataFiles/Saccharomyces_cerevisiae.csv (188 bytes security) (deflated 50%)
adding: seqnames-template/inst/extdata/dataFiles/Zea_mays.csv (188 bytes security) (deflated 6%)
adding: seqnames-template/NAMESPACE (188 bytes security) (deflated 1%)
adding: TODO (188 bytes security) (deflated 41%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/test_makeOrgPackage.R (188 bytes security) (deflated 64%)