BioC 3.3: CHECK report for rgsepd on windows2.bioconductor.org

Package: rgsepd

Version: 1.3.0

Command: rm -rf rgsepd.buildbin-libdir rgsepd.Rcheck && mkdir rgsepd.buildbin-libdir rgsepd.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rgsepd.buildbin-libdir rgsepd_1.3.0.tar.gz >rgsepd.Rcheck\00install.out 2>&1 && cp rgsepd.Rcheck\00install.out rgsepd-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rgsepd.buildbin-libdir --install="check:rgsepd-install.out" --force-multiarch --no-vignettes --timings rgsepd_1.3.0.tar.gz

StartedAt: 2015-10-27 05:32:01 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 05:45:08 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 787.1 seconds

RetCode: 0

Status:  OK

CheckDir: rgsepd.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf rgsepd.buildbin-libdir rgsepd.Rcheck && mkdir rgsepd.buildbin-libdir rgsepd.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rgsepd.buildbin-libdir rgsepd_1.3.0.tar.gz >rgsepd.Rcheck\00install.out 2>&1 && cp rgsepd.Rcheck\00install.out rgsepd-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=rgsepd.buildbin-libdir --install="check:rgsepd-install.out" --force-multiarch --no-vignettes --timings rgsepd_1.3.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/rgsepd.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rgsepd/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rgsepd' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rgsepd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [185s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
GSEPD_DEGHeatmap 146.15   8.36     155
** running examples for arch 'x64' ... [205s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
GSEPD_DEGHeatmap 163.51   7.07  171.72
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'rgsepd' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns

install for x64

* installing *source* package 'rgsepd' ...
** testing if installed package can be loaded
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
* MD5 sums
packaged installation of 'rgsepd' as rgsepd_1.3.0.zip
* DONE (rgsepd)

name	user	system	elapsed
DisplayName	0.01	0.00	0.02
GSEPD_ChangeConditions	0.58	0.02	0.59
GSEPD_ChangeOutput	0.88	0.00	0.88
GSEPD_DEGHeatmap	146.15	8.36	155.00
GSEPD_Export_DESeq	0.5	0.0	0.5
GSEPD_Heatmap	2.39	0.00	2.39
GSEPD_INIT	0.47	0.01	0.49
GSEPD_PCA_Plot	2.81	0.01	2.83
GSEPD_PCA_Spec	2.52	0.02	2.53
GSEPD_Process	0.39	0.03	0.43
GSEPD_ProcessAll	0.43	0.01	0.45
GSEPD_PullDEG	2.61	0.00	2.61
IlluminaBodymap	0.66	0.00	0.65
IlluminaBodymapMeta	0.02	0.00	0.02
Name_to_RefSeq	0	0	0
rgsepd-package	0.42	0.00	0.42

name	user	system	elapsed
DisplayName	0	0	0
GSEPD_ChangeConditions	1.25	0.00	1.25
GSEPD_ChangeOutput	0.39	0.01	0.40
GSEPD_DEGHeatmap	163.51	7.07	171.72
GSEPD_Export_DESeq	0.48	0.01	0.50
GSEPD_Heatmap	2.74	0.00	2.74
GSEPD_INIT	0.39	0.00	0.39
GSEPD_PCA_Plot	3.12	0.02	3.14
GSEPD_PCA_Spec	2.69	0.00	2.69
GSEPD_Process	0.38	0.00	0.37
GSEPD_ProcessAll	0.40	0.00	0.41
GSEPD_PullDEG	2.50	0.01	2.51
IlluminaBodymap	0.38	0.00	0.38
IlluminaBodymapMeta	0.01	0.00	0.02
Name_to_RefSeq	0	0	0
rgsepd-package	0.39	0.00	0.39