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BioC 3.3: BUILD report for rCGH on morelia

This page was generated on 2015-10-22 17:55:02 -0400 (Thu, 22 Oct 2015).

Package 851/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rCGH 1.1.0
Frederic Commo
Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rCGH
Last Changed Rev: 109592 / Revision: 109826
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: rCGH
Version: 1.1.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rCGH
StartedAt: 2015-10-22 02:29:25 -0400 (Thu, 22 Oct 2015)
EndedAt: 2015-10-22 02:29:43 -0400 (Thu, 22 Oct 2015)
EllapsedTime: 18.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rCGH
###
##############################################################################
##############################################################################


* checking for file ‘rCGH/DESCRIPTION’ ... OK
* preparing ‘rCGH’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘rCGH’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in append(geneDB, GRanges(c("chr19", "chr6"), IRanges(c(15270444,  : 
  error in evaluating the argument 'values' in selecting a method for function 'append': Error in newGRanges("GRanges", seqnames = seqnames, ranges = ranges, strand = strand,  : 
  could not find function "IRanges"

Error : unable to load R code in package ‘rCGH’
ERROR: lazy loading failed for package ‘rCGH’
* removing ‘/private/tmp/RtmpXy2AoY/Rinst1624f81cc03d/rCGH’
      -----------------------------------
ERROR: package installation failed