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BioC 3.3: BUILD BIN report for lfa on morelia

This page was generated on 2015-10-22 17:55:10 -0400 (Thu, 22 Oct 2015).

Package 563/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lfa 1.1.1
Wei Hao , John D. Storey
Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lfa
Last Changed Rev: 109671 / Revision: 109826
Last Changed Date: 2015-10-15 16:55:30 -0400 (Thu, 15 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: lfa
Version: 1.1.1
Command: rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.1.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
StartedAt: 2015-10-22 14:38:37 -0400 (Thu, 22 Oct 2015)
EndedAt: 2015-10-22 14:39:11 -0400 (Thu, 22 Oct 2015)
EllapsedTime: 34.2 seconds
RetCode: 0
Status:  OK 
PackageFile: lfa_1.1.1.tgz
PackageFileSize: 399.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.1.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=lfa.buildbin-libdir lfa_1.1.1.tar.gz'
>>>>>>> 

* installing *source* package ‘lfa’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c fastmat.c -o fastmat.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lfa-init.c -o lfa-init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lfa.c -o lfa.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lreg.c -o lreg.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lfa.so fastmat.o lfa-init.o lfa.o lreg.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/lfa.buildbin-libdir/lfa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lfa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR lfa.buildbin-libdir/lfa/libs//lfa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"