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This page was generated on 2015-10-27 12:16:07 -0400 (Tue, 27 Oct 2015).
| Package 139/1104 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| caOmicsV 1.1.0 Henry Zhang
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK |  | |||||
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| Package: caOmicsV |
| Version: 1.1.0 |
| Command: rm -rf caOmicsV.buildbin-libdir caOmicsV.Rcheck && mkdir caOmicsV.buildbin-libdir caOmicsV.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=caOmicsV.buildbin-libdir caOmicsV_1.1.0.tar.gz >caOmicsV.Rcheck\00install.out 2>&1 && cp caOmicsV.Rcheck\00install.out caOmicsV-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=caOmicsV.buildbin-libdir --install="check:caOmicsV-install.out" --force-multiarch --no-vignettes --timings caOmicsV_1.1.0.tar.gz |
| StartedAt: 2015-10-27 01:07:09 -0400 (Tue, 27 Oct 2015) |
| EndedAt: 2015-10-27 01:10:05 -0400 (Tue, 27 Oct 2015) |
| EllapsedTime: 176.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: caOmicsV.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf caOmicsV.buildbin-libdir caOmicsV.Rcheck && mkdir caOmicsV.buildbin-libdir caOmicsV.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=caOmicsV.buildbin-libdir caOmicsV_1.1.0.tar.gz >caOmicsV.Rcheck\00install.out 2>&1 && cp caOmicsV.Rcheck\00install.out caOmicsV-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=caOmicsV.buildbin-libdir --install="check:caOmicsV-install.out" --force-multiarch --no-vignettes --timings caOmicsV_1.1.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/caOmicsV.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'caOmicsV/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'caOmicsV' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'caOmicsV' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [65s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bioNetLegend 8.71 0.22 8.92
plotBioNetCircos 8.70 0.18 8.91
plotBioNetHeatmap 6.02 0.14 6.15
** running examples for arch 'x64' ... [55s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
bioNetLegend 8.00 0.20 8.20
plotBioNetCircos 7.67 0.19 7.86
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
caOmicsV.Rcheck/00install.out:
install for i386 * installing *source* package 'caOmicsV' ... ** R ** data ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'caOmicsV' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'caOmicsV' as caOmicsV_1.1.0.zip * DONE (caOmicsV)
caOmicsV.Rcheck/examples_i386/caOmicsV-Ex.timings:
| name | user | system | elapsed | |
| CA_OMICS_ENV | 0 | 0 | 0 | |
| CA_OMICS_NAME | 0 | 0 | 0 | |
| CA_OMICS_NA_STRING | 0 | 0 | 0 | |
| CNVDemoData | 0.03 | 0.00 | 0.03 | |
| RNA2miRNA | 0 | 0 | 0 | |
| RNASeq | 0.00 | 0.02 | 0.02 | |
| RNASeqDemoData | 0 | 0 | 0 | |
| bioMatrixLegend | 0.24 | 0.00 | 0.23 | |
| bioNetCircosPlot | 2.32 | 0.03 | 2.41 | |
| bioNetLegend | 8.71 | 0.22 | 8.92 | |
| biomatrixPlotDemoData | 0 | 0 | 0 | |
| bionetPlotDemoData | 0 | 0 | 0 | |
| convertToZScores | 0 | 0 | 0 | |
| drawBioNetNodeBackground | 4.75 | 0.09 | 4.84 | |
| eraseBioNetNode | 2.54 | 0.00 | 2.54 | |
| getBezierCurve | 0 | 0 | 0 | |
| getBioMatrixDataRowTop | 0 | 0 | 0 | |
| getBioMatrixPlotParameters | 0.02 | 0.00 | 0.02 | |
| getBioNetNodeLinkLine | 0 | 0 | 0 | |
| getBioNetParameters | 0.3 | 0.0 | 0.3 | |
| getBioNetPlotLocations | 0.31 | 0.00 | 0.31 | |
| getBioNetSamplePlotPosition | 0 | 0 | 0 | |
| getCaOmicsVColors | 0 | 0 | 0 | |
| getCaOmicsVPlotTypes | 0 | 0 | 0 | |
| getDefaultNaStrings | 0 | 0 | 0 | |
| getHeatmapColorScales | 0 | 0 | 0 | |
| getPlotDataSet | 0.03 | 0.00 | 0.03 | |
| getPlotOmicsData | 0.02 | 0.00 | 0.02 | |
| getPlotSampleData | 0 | 0 | 0 | |
| getPlotSummaryData | 0 | 0 | 0 | |
| getRelatedPlotData | 0.04 | 0.00 | 0.04 | |
| initializeBioMatrixPlot | 0 | 0 | 0 | |
| initializeBioNetCircos | 0.33 | 0.00 | 0.33 | |
| labelBioNetNodeNames | 2.06 | 0.05 | 2.11 | |
| linkBioNetNodes | 2.05 | 0.03 | 2.08 | |
| linkBioNetSamples | 2.50 | 0.02 | 2.51 | |
| methylDemoData | 0 | 0 | 0 | |
| miRNA | 0 | 0 | 0 | |
| miRNADemoData | 0.00 | 0.01 | 0.02 | |
| plotBioMatrix | 0.93 | 0.02 | 0.95 | |
| plotBioMatrixBars | 0.02 | 0.00 | 0.01 | |
| plotBioMatrixBinaryData | 0.00 | 0.01 | 0.02 | |
| plotBioMatrixCategoryData | 0.02 | 0.00 | 0.02 | |
| plotBioMatrixHeatmap | 0.01 | 0.00 | 0.01 | |
| plotBioMatrixRowNames | 0.05 | 0.00 | 0.05 | |
| plotBioMatrixSampleData | 0.01 | 0.00 | 0.01 | |
| plotBioMatrixSampleNames | 0 | 0 | 0 | |
| plotBioNetBars | 2.66 | 0.07 | 2.72 | |
| plotBioNetCircos | 8.70 | 0.18 | 8.91 | |
| plotBioNetHeatmap | 6.02 | 0.14 | 6.15 | |
| plotBioNetLines | 4.33 | 0.04 | 4.36 | |
| plotBioNetPoints | 4.54 | 0.06 | 4.61 | |
| plotBioNetPolygons | 4.35 | 0.14 | 4.49 | |
| plotHeatmapColorScale | 1.40 | 0.03 | 1.44 | |
| resetBioNetNodePlotAreaBoundary | 0 | 0 | 0 | |
| sampleDemoData | 0 | 0 | 0 | |
| setBioMatrixBaseCoordinates | 0 | 0 | 0 | |
| setBioMatrixPlotArea | 0.00 | 0.02 | 0.01 | |
| setBioMatrixPlotParameters | 0 | 0 | 0 | |
| setBioNetCircosBasePlotPositions | 0 | 0 | 0 | |
| setBioNetNodeLayout | 0.5 | 0.0 | 0.5 | |
| setBioNetPlotAreaBackground | 0.11 | 0.00 | 0.11 | |
| setBioNetPlotParameters | 0 | 0 | 0 | |
| setCaOmicsVColors | 0 | 0 | 0 | |
| setDefaultNaStrings | 0 | 0 | 0 | |
| showBioMatrixPlotLayout | 0.02 | 0.00 | 0.02 | |
| showBioNetNodesLayout | 1.70 | 0.03 | 1.73 | |
| showSupportedBioNetCircosPlotType | 0 | 0 | 0 | |
| sortClinicalData | 0 | 0 | 0 | |
| sortOmicsDataByColumn | 0 | 0 | 0 | |
| sortOmicsDataByRow | 0.02 | 0.00 | 0.02 | |
caOmicsV.Rcheck/examples_x64/caOmicsV-Ex.timings:
| name | user | system | elapsed | |
| CA_OMICS_ENV | 0 | 0 | 0 | |
| CA_OMICS_NAME | 0 | 0 | 0 | |
| CA_OMICS_NA_STRING | 0 | 0 | 0 | |
| CNVDemoData | 0.00 | 0.02 | 0.02 | |
| RNA2miRNA | 0 | 0 | 0 | |
| RNASeq | 0.00 | 0.01 | 0.01 | |
| RNASeqDemoData | 0 | 0 | 0 | |
| bioMatrixLegend | 0.31 | 0.00 | 0.32 | |
| bioNetCircosPlot | 2.82 | 0.13 | 2.93 | |
| bioNetLegend | 8.0 | 0.2 | 8.2 | |
| biomatrixPlotDemoData | 0 | 0 | 0 | |
| bionetPlotDemoData | 0 | 0 | 0 | |
| convertToZScores | 0 | 0 | 0 | |
| drawBioNetNodeBackground | 4.11 | 0.08 | 4.19 | |
| eraseBioNetNode | 2.15 | 0.05 | 2.20 | |
| getBezierCurve | 0 | 0 | 0 | |
| getBioMatrixDataRowTop | 0 | 0 | 0 | |
| getBioMatrixPlotParameters | 0 | 0 | 0 | |
| getBioNetNodeLinkLine | 0 | 0 | 0 | |
| getBioNetParameters | 0.3 | 0.0 | 0.3 | |
| getBioNetPlotLocations | 0.39 | 0.00 | 0.39 | |
| getBioNetSamplePlotPosition | 0 | 0 | 0 | |
| getCaOmicsVColors | 0 | 0 | 0 | |
| getCaOmicsVPlotTypes | 0 | 0 | 0 | |
| getDefaultNaStrings | 0 | 0 | 0 | |
| getHeatmapColorScales | 0 | 0 | 0 | |
| getPlotDataSet | 0.03 | 0.00 | 0.03 | |
| getPlotOmicsData | 0.02 | 0.00 | 0.01 | |
| getPlotSampleData | 0 | 0 | 0 | |
| getPlotSummaryData | 0.01 | 0.00 | 0.02 | |
| getRelatedPlotData | 0.04 | 0.00 | 0.03 | |
| initializeBioMatrixPlot | 0 | 0 | 0 | |
| initializeBioNetCircos | 0.35 | 0.03 | 0.39 | |
| labelBioNetNodeNames | 1.69 | 0.06 | 1.75 | |
| linkBioNetNodes | 1.53 | 0.03 | 1.56 | |
| linkBioNetSamples | 1.57 | 0.02 | 1.58 | |
| methylDemoData | 0 | 0 | 0 | |
| miRNA | 0 | 0 | 0 | |
| miRNADemoData | 0 | 0 | 0 | |
| plotBioMatrix | 0.56 | 0.01 | 0.58 | |
| plotBioMatrixBars | 0.01 | 0.00 | 0.01 | |
| plotBioMatrixBinaryData | 0 | 0 | 0 | |
| plotBioMatrixCategoryData | 0.02 | 0.00 | 0.02 | |
| plotBioMatrixHeatmap | 0.00 | 0.02 | 0.02 | |
| plotBioMatrixRowNames | 0.05 | 0.00 | 0.04 | |
| plotBioMatrixSampleData | 0.01 | 0.00 | 0.02 | |
| plotBioMatrixSampleNames | 0 | 0 | 0 | |
| plotBioNetBars | 2.30 | 0.01 | 2.31 | |
| plotBioNetCircos | 7.67 | 0.19 | 7.86 | |
| plotBioNetHeatmap | 4.84 | 0.09 | 4.95 | |
| plotBioNetLines | 3.30 | 0.05 | 3.35 | |
| plotBioNetPoints | 3.19 | 0.09 | 3.28 | |
| plotBioNetPolygons | 3.31 | 0.07 | 3.37 | |
| plotHeatmapColorScale | 1.22 | 0.01 | 1.24 | |
| resetBioNetNodePlotAreaBoundary | 0 | 0 | 0 | |
| sampleDemoData | 0 | 0 | 0 | |
| setBioMatrixBaseCoordinates | 0 | 0 | 0 | |
| setBioMatrixPlotArea | 0 | 0 | 0 | |
| setBioMatrixPlotParameters | 0 | 0 | 0 | |
| setBioNetCircosBasePlotPositions | 0.02 | 0.00 | 0.01 | |
| setBioNetNodeLayout | 0.42 | 0.02 | 0.44 | |
| setBioNetPlotAreaBackground | 0.09 | 0.00 | 0.09 | |
| setBioNetPlotParameters | 0 | 0 | 0 | |
| setCaOmicsVColors | 0 | 0 | 0 | |
| setDefaultNaStrings | 0 | 0 | 0 | |
| showBioMatrixPlotLayout | 0.02 | 0.00 | 0.02 | |
| showBioNetNodesLayout | 1.14 | 0.01 | 1.16 | |
| showSupportedBioNetCircosPlotType | 0 | 0 | 0 | |
| sortClinicalData | 0 | 0 | 0 | |
| sortOmicsDataByColumn | 0 | 0 | 0 | |
| sortOmicsDataByRow | 0 | 0 | 0 | |