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BioC 3.3: BUILD report for Rsubread on morelia

This page was generated on 2015-10-22 17:52:57 -0400 (Thu, 22 Oct 2015).

Package 919/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rsubread 1.21.0
Wei Shi
Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rsubread
Last Changed Rev: 109777 / Revision: 109826
Last Changed Date: 2015-10-19 23:43:43 -0400 (Mon, 19 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: Rsubread
Version: 1.21.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
StartedAt: 2015-10-21 23:17:05 -0400 (Wed, 21 Oct 2015)
EndedAt: 2015-10-21 23:17:22 -0400 (Wed, 21 Oct 2015)
EllapsedTime: 17.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
###
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* checking for file ‘Rsubread/DESCRIPTION’ ... OK
* preparing ‘Rsubread’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
R: unrecognized option `--BAMoutput'
R: unrecognized option `--BAMoutput'

Error: processing vignette 'Rsubread.Rnw' failed with diagnostics:
 chunk 4 
Error in featureCounts("alignResults.BAM", annot.ext = ann) : 
  No count data were generated.
Execution halted