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BioC 3.3: CHECK report for RTCA on windows2.bioconductor.org

This page was generated on 2015-10-27 12:14:34 -0400 (Tue, 27 Oct 2015).

Package 922/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTCA 1.23.0
Jitao David Zhang
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RTCA
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: RTCA
Version: 1.23.0
Command: rm -rf RTCA.buildbin-libdir RTCA.Rcheck && mkdir RTCA.buildbin-libdir RTCA.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTCA.buildbin-libdir RTCA_1.23.0.tar.gz >RTCA.Rcheck\00install.out 2>&1 && cp RTCA.Rcheck\00install.out RTCA-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RTCA.buildbin-libdir --install="check:RTCA-install.out" --force-multiarch --no-vignettes --timings RTCA_1.23.0.tar.gz
StartedAt: 2015-10-27 05:49:10 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 05:49:56 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 46.1 seconds
RetCode: 0
Status:  OK  
CheckDir: RTCA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTCA.buildbin-libdir RTCA.Rcheck && mkdir RTCA.buildbin-libdir RTCA.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTCA.buildbin-libdir RTCA_1.23.0.tar.gz >RTCA.Rcheck\00install.out 2>&1 && cp RTCA.Rcheck\00install.out RTCA-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RTCA.buildbin-libdir --install="check:RTCA-install.out" --force-multiarch --no-vignettes --timings RTCA_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/RTCA.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTCA' version '1.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'essentials.R' [2s]
 [2s] OK
** running tests for arch 'x64' ...
  Running 'essentials.R' [2s]
 [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTCA.Rcheck/00install.out:


install for i386

* installing *source* package 'RTCA' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'time' from package 'stats' in package 'RTCA'
Creating a generic function for 'plot' from package 'graphics' in package 'RTCA'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCA' as RTCA_1.23.0.zip
* DONE (RTCA)

RTCA.Rcheck/examples_i386/RTCA-Ex.timings:

nameusersystemelapsed
RTCA-class0.230.000.24
RTCAtimeline-class000
alphaNames0.020.000.01
combineRTCA0.170.000.17
controlView0.160.000.16
derivativeTransform0.170.000.17
factor2numeric000
interpolationTransform0.280.020.30
nearestTimeIndex0.140.000.14
parseRTCA0.530.000.53
plateView0.230.000.23
plotGridEffect0.300.010.31
ratioTransform0.110.000.11
rgrTransform0.360.040.39
sliceRTCA0.120.000.13
smoothTransform0.240.000.23
spectramaxImport0.010.000.02

RTCA.Rcheck/examples_x64/RTCA-Ex.timings:

nameusersystemelapsed
RTCA-class0.170.000.17
RTCAtimeline-class000
alphaNames000
combineRTCA0.20.00.2
controlView0.190.000.19
derivativeTransform0.220.000.21
factor2numeric0.010.000.02
interpolationTransform0.410.010.42
nearestTimeIndex0.190.000.19
parseRTCA0.670.000.67
plateView0.270.000.27
plotGridEffect0.430.000.43
ratioTransform0.140.000.15
rgrTransform0.380.000.37
sliceRTCA0.140.000.14
smoothTransform0.30.00.3
spectramaxImport000