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BioC 3.3: BUILD report for ProteomicsAnnotationHubData on morelia

This page was generated on 2015-10-22 17:55:08 -0400 (Thu, 22 Oct 2015).

Package 808/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ProteomicsAnnotationHubData 1.1.0
Laurent Gatto
Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ProteomicsAnnotationHubData
Last Changed Rev: 109592 / Revision: 109826
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: ProteomicsAnnotationHubData
Version: 1.1.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ProteomicsAnnotationHubData
StartedAt: 2015-10-22 02:37:28 -0400 (Thu, 22 Oct 2015)
EndedAt: 2015-10-22 02:37:48 -0400 (Thu, 22 Oct 2015)
EllapsedTime: 20.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ProteomicsAnnotationHubData
###
##############################################################################
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* checking for file ‘ProteomicsAnnotationHubData/DESCRIPTION’ ... OK
* preparing ‘ProteomicsAnnotationHubData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘ProteomicsAnnotationHubData’ ...
** R
** inst
** preparing package for lazy loading
erwinia_carotovora.fasta
F063721.dat-mztab.txt
PXD000001
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML
INFO [2015-10-22 02:37:48] Preparer Class: PXD000001FastaToAAStringSetPreparer
Error in if (nchar(genome) > 30) { : 
  missing value where TRUE/FALSE needed
Error : unable to load R code in package ‘ProteomicsAnnotationHubData’
ERROR: lazy loading failed for package ‘ProteomicsAnnotationHubData’
* removing ‘/private/tmp/RtmpD2T9aW/Rinst1826a4e2dbec2/ProteomicsAnnotationHubData’
      -----------------------------------
ERROR: package installation failed