BioC 3.3: CHECK report for PANR on morelia

Package: PANR

Version: 1.17.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings PANR_1.17.0.tar.gz

StartedAt: 2015-10-22 09:21:25 -0400 (Thu, 22 Oct 2015)

EndedAt: 2015-10-22 09:22:17 -0400 (Thu, 22 Oct 2015)

EllapsedTime: 52.4 seconds

RetCode: 0

Status:  OK

CheckDir: PANR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings PANR_1.17.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-bioc/meat/PANR.Rcheck’
* using R Under development (unstable) (2015-10-08 r69496)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PANR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PANR’ version ‘1.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PANR’ can be installed ... [2s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/18s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fitNULL 15.693  0.112  15.816
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘PANR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PANR)

name	user	system	elapsed
BetaMixture-class	0.001	0.000	0.000
PAN-class	0.001	0.000	0.000
SNR2p	0.000	0.000	0.001
assoScore	0.014	0.001	0.015
buildPAN	0.516	0.016	0.532
cosineSim	0.002	0.000	0.002
data-Bakal2007	0.014	0.002	0.015
exportPAN	0.001	0.000	0.001
fitBM	0	0	0
fitNULL	15.693	0.112	15.816
infer	0.285	0.008	0.292
p2SNR	0.000	0.000	0.001
permNULL	0.057	0.002	0.059
pvclustModule	0	0	0
sigModules	0.001	0.000	0.001
summarize	0.011	0.001	0.012
view	0.105	0.012	0.118
viewLegend	0.001	0.000	0.000
viewNestedModules	0.000	0.000	0.001
viewPAN	0.001	0.000	0.001