HTqPCR 1.25.0
Heidi Dvinge
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTqPCR | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR
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* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* preparing ‘HTqPCR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap, parApply,
parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated,
append, as.data.frame, as.vector, cbind, colnames,
do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff,
sort, table, tapply, union, unique, unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: RColorBrewer
Loading required package: limma
Attaching package: ‘limma’
The following object is masked from ‘package:BiocGenerics’:
plotMA
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 6 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group == :
Outlier (-Inf) in boxplot 6 is not drawn
Error: processing vignette 'HTqPCR.Rnw' failed with diagnostics:
chunk 74 (label = Significant Ct)
Error in par(mar = mar) :
invalid value specified for graphical parameter "mar"
Execution halted