Guitar 1.3.2 Jia Meng
Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Guitar | Last Changed Rev: 109780 / Revision: 109826 | Last Changed Date: 2015-10-19 23:53:30 -0400 (Mon, 19 Oct 2015) |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Guitar
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* checking for file ‘Guitar/DESCRIPTION’ ... OK
* preparing ‘Guitar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rsamtools
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame, as.vector,
cbind, colnames, do.call, duplicated, eval,
evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unlist, unsplit
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: XVector
Loading required package: Biostrings
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view
with 'browseVignettes()'. To cite Bioconductor,
see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: rtracklayer
Loading required package: GenomicAlignments
Loading required package: SummarizedExperiment
Loading required package: ggplot2
Loading required package: grid
Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale.
Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale.
Error: processing vignette 'Guitar-Overview.Rnw' failed with diagnostics:
chunk 9 (label = mm10_example)
Error in value[[3L]](cond) :
failed to open BamFile: file(s) do not exist:
''
Execution halted