CoverageView 1.7.0
Ernesto Lowy
| Snapshot Date: 2015-10-21 20:20:05 -0400 (Wed, 21 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CoverageView | | Last Changed Rev: 109592 / Revision: 109826 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings CoverageView_1.7.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-bioc/meat/CoverageView.Rcheck’
* using R Under development (unstable) (2015-10-08 r69496)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CoverageView/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CoverageView’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CoverageView’ can be installed ... [10s/10s] WARNING
Found the following significant warnings:
Warning: replacing previous import by ‘BiocGenerics::parLapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterExport’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterCall’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parCapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parLapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterMap’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterEvalQ’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parRapply’ when loading ‘CoverageView’
See ‘/Users/biocbuild/bbs-3.3-bioc/meat/CoverageView.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.3-bioc/meat/CoverageView.Rcheck/00check.log’
for details.
* installing *source* package ‘CoverageView’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘BiocGenerics::parLapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterExport’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterCall’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parCapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parLapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterMap’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterEvalQ’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parRapply’ when loading ‘CoverageView’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘BiocGenerics::parLapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterExport’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterCall’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterApply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parSapplyLB’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parCapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parLapply’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterMap’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::clusterEvalQ’ when loading ‘CoverageView’
Warning: replacing previous import by ‘BiocGenerics::parRapply’ when loading ‘CoverageView’
* DONE (CoverageView)